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From: Scott C. <sc...@sc...> - 2023-04-14 16:41:35
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Highlights - Submit <https://www.open-bio.org/events/bosc-2023/submit/> your 1-2 page abstract by April 20 (by the end of the day anywhere in the world). (Sorry, no extensions.) - You can request registration fee assistance right on the submission form! - We have two exciting Keynote Speakers <https://www.open-bio.org/events/bosc-2023/bosc-2023-keynotes/> lined up! - We are planning a Panel Discussion about Open and Ethical Data Sharing! - BOSC and Bio-Ontologies <https://www.bio-ontologies.org.uk/ismb-annual-meeting/2023-meeting> will join forces for a joint session on July 24 or 25. - We welcome our first sponsors <https://www.open-bio.org/events/sponsors/> (more coming soon): GigaScience <https://academic.oup.com/gigascience>, GeneVia <https://geneviatechnologies.com/>, and Software Sustainability Institute <https://www.software.ac.uk/>! Keynote speakers [image: Sara El-Gebali] Sara El-Gebali <https://www.open-bio.org/events/bosc-2023/bosc-2023-keynotes/> (SciLifeLab-DataCentre-Sweden): “A New Odyssey: Pioneering the Future of Scientific Progress Through Open Collaboration.” Joseph M. Yracheta <https://www.open-bio.org/events/bosc-2023/bosc-2023-keynotes/> (Native BioData Consortium): “The Dissonance between Scientific Altruism & Capitalist Extraction: The Zero Trust and Federated Data Sovereignty Solution Abstract submission We encourage you to submit abstracts <https://www.open-bio.org/events/bosc-2023/submit/> (due April 20 – sorry, no extensions) on any topic relevant to open source bioinformatics or open science (see topic list below). After review, some abstracts will be selected for lightning talks, longer talks, or posters. A second “late poster” round of submissions will end May 18. Abstract submission is via ISMB’s EasyChair (linked from our submission page <https://www.open-bio.org/events/bosc-2023/submit/>). Note that ISMB requires a short (200-word) text-only abstract for all submissions (talk or poster), plus a “long abstract” (PDF, 2 pages max) if you want to be considered for a talk. About BOSC Since 2000, the Bioinformatics Open Source Conference <https://www.open-bio.org/events/bosc-2021/about/> has provided a forum for developers and users to interact and share research results and ideas in open source bioinformatics and open science. As usual, BOSC 2023 <https://www.open-bio.org/events/bosc-2023/> will include keynote talks, longer and shorter (lightning) talks from submitted abstracts, posters, Birds of a Feather, and more! Like last year, BOSC and Bio-Ontologies <https://www.bio-ontologies.org.uk/ismb-annual-meeting/2023-meeting> will join forces for a joint session. BOSC topics include (but are not limited to): - Open Science and Reproducible Research - Open Biomedical Data - Citizen/Participatory Science - Standards and Interoperability - Data Science - Workflows - Open Approaches to Translational Bioinformatics - Open Science for Global Health - Developer Tools and Libraries - Inclusion, Outreach and Training - Bioinformatics Open Source Project Reports (about new or existing projects) - Open and interoperable ontologies (joint session with Bio-Ontologies) Registration fee assistance We realize that the cost of ISMB may be prohibitive for some. If you are submitting an abstract to BOSC and would have difficulty covering the cost of registration, you can request to be considered for a registration fee waiver right on the abstract submission form (your request will not be seen by reviewers). Fee waivers are made possible by our sponsors <https://www.open-bio.org/events/sponsors/>. Sponsors We welcome the first Silver sponsors <https://www.open-bio.org/events/sponsors/> of BOSC 2023! If you’re interested in becoming a sponsor, let us know! [image: Gigascience] <https://academic.oup.com/gigascience> <https://geneviatechnologies.com/> <https://www.software.ac.uk/> ------------------------------ Key Dates - April 20, 2023: Deadline for submitting talk/poster abstracts <https://www.open-bio.org/events/bosc-2023/submit/> - May 11: Talk/poster acceptance notifications - May 18: Late poster submission deadline - May 25: Late poster acceptance notifications - July 24-25: BOSC 2023 <https://www.open-bio.org/events/bosc-2023/> (part of ISMB/ECCB 2023 in Lyon, France, and online) - CollaborationFest <https://www.open-bio.org/events/bosc-2023/obf-bosc-collaborationfest-2023/> (CoFest) – July 22-23 (Lyon, France, and online) Join our community! - BOSC announcements mailing list: <http://lists.open-bio.org/mailman/listinfo/bosc-announce> https://groups.google.com/forum/#!forum/bosc-announce - Slack: https://join.slack.com/t/obf-bosc/shared_invite/zt-n5ur1gsj-z2C~69_4lYTFPg5tbWA8Ew - Twitter: @OBF_BOSC <https://twitter.com/OBF_BOSC>, #BOSC2023 - Mastodon: https://genomic.social/@BOSC - Website: <https://www.open-bio.org/wiki/BOSC_2019> https://www.open-bio.org/events/bosc/ ------------------------------ We look forward to reading your abstract and seeing you (in person or virtually) at BOSC 2023! Sincerely, BOSC 2023 Organizing Committee (Nomi Harris, Karsten Hokamp, Hervé Ménager, Monica Munoz-Torres, Deepak Unni, Jason Williams, Chris Fields, Jessica Maia, Radhika Khetani) -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Project Manager (http://gmod.org/) 216-392-3087 WormBase Developer (http://wormbase.org/) Alliance of Genome Resources Group Leader (http://alliancegenome.org/) VirusSeq Project Manager (https://virusseq-dataportal.ca/) Human Cancer Models Initiative Project Manager ( https://hcmi-searchable-catalog.nci.nih.gov/) |
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From: Scott C. <sc...@sc...> - 2020-02-21 02:16:33
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Hello, I am very pleased to announce that GMOD in conjunction with Reactome, Galaxy and OICR/WormBase, together forming Open Genome Informatics, has been accepted for the Google Summer of Code. If you or someone you know might be a student interested in participating in GSoC, please take a look at http://gmod.org/wiki/GSOC_Project_Ideas_2020 where there are proposed projects that cover a fair number of technologies. Official proposals from students will be due in mid March (more on that later). But WAIT! There's more: if you might be interested in being a mentor and working with a student this summer, it's not too late! You can add new project ideas to the page above (contact me if you need an account), or you can even volunteer to add yourself to one of the existing ideas as a potential mentor. Please feel free to forward this to other mailing lists or people who might be interested. We are already an eclectic, dispersed group, so everyone is welcome. Thanks, Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Scott C. <sc...@sc...> - 2020-01-31 18:05:55
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Hi all, It's that time of year to be putting together Google Summer of Code project ideas. The deadline is fast approaching. The application is due on Feb 5, so if you'd like to get some ideas on the wiki page, now is the time: http://gmod.org/wiki/GSOC_Project_Ideas_2020 If you need an account to edit the page, please let me know. Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Nathan D. <nat...@lb...> - 2019-10-10 23:01:11
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I plan on being there to work on user’s Apollo-based problems (or JBrowse ones if that is more pertinent). I’ve copied on the Apollo list. Looking forward to seeing you there, Nathan > On Oct 10, 2019, at 2:40 PM, Scott Cain <sc...@sc...> wrote: > > I am pleased to announce there will be a GMOD codefest occurring before the Plant and Animal Genomes meeting in San Diego. The codefest will be at the Town and Country hotel on January 9 and 10. If you would like to suggest a problem or project to address, add it to this Google Doc <https://docs.google.com/document/d/1_CnUW_W4tNyl7lSlihCwZDKT45VQQxcI3I-VgjnC2Dc/edit?usp=sharing>. The codefest is open to anyone who'd like to work on any GMOD project (or, better yet, any combination of GMOD projects), including but not limited to Tripal <http://gmod.org/wiki/Tripal>, Chado <http://gmod.org/wiki/Chado>, JBrowse <http://gmod.org/wiki/JBrowse> (1 and 2), Galaxy <http://gmod.org/wiki/Galaxy> and InterMine <http://gmod.org/wiki/InterMine>. We already know that there will be Tripal, Chado and JBrowse developers present. Registration information will be coming soon. > > You can follow the changes to this page: > > http://gmod.org/wiki/Codefest_2020 <http://gmod.org/wiki/Codefest_2020> > > to keep up to date, or follow The Tweet of GMOD (@gmodproject) on Twitter. > > See you in San Diego, > Scott > > > -- > ------------------------------------------------------------------------ > Scott Cain, Ph. D. scott at scottcain dot net > GMOD Coordinator (http://gmod.org/ <http://gmod.org/>) 216-392-3087 > Ontario Institute for Cancer Research > _______________________________________________ > Gmod-devel mailing list > Gmo...@li... > https://lists.sourceforge.net/lists/listinfo/gmod-devel |
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From: Scott C. <sc...@sc...> - 2019-10-10 21:40:49
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I am pleased to announce there will be a GMOD codefest occurring before the Plant and Animal Genomes meeting in San Diego. The codefest will be at the Town and Country hotel on January 9 and 10. If you would like to suggest a problem or project to address, add it to this Google Doc <https://docs.google.com/document/d/1_CnUW_W4tNyl7lSlihCwZDKT45VQQxcI3I-VgjnC2Dc/edit?usp=sharing>. The codefest is open to anyone who'd like to work on any GMOD project (or, better yet, any combination of GMOD projects), including but not limited to Tripal <http://gmod.org/wiki/Tripal>, Chado <http://gmod.org/wiki/Chado>, JBrowse <http://gmod.org/wiki/JBrowse> (1 and 2), Galaxy <http://gmod.org/wiki/Galaxy> and InterMine <http://gmod.org/wiki/InterMine>. We already know that there will be Tripal, Chado and JBrowse developers present. Registration information will be coming soon. You can follow the changes to this page: http://gmod.org/wiki/Codefest_2020 to keep up to date, or follow The Tweet of GMOD (@gmodproject) on Twitter. See you in San Diego, Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Fields, C. J <cjf...@il...> - 2019-03-19 22:49:35
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You can forward it, that works for me ;) Thanks! Chris Sent from my iPhone On Mar 19, 2019, at 5:10 PM, Scott Cain <sc...@sc...<mailto:sc...@sc...>> wrote: Do you want to send them directly or should I forward? It doesn't matter much to me: gmo...@li...<mailto:gmo...@li...> gmo...@li...<mailto:gmo...@li...> gmo...@li...<mailto:gmo...@li...> gmo...@li...<mailto:gmo...@li...> ap...@lb...<mailto:ap...@lb...> Ordinarily, I'd through the intermine and galaxy mailing lists in there too, but in the case of BOSC I don't think that's necessary :-) On Tue, Mar 19, 2019 at 2:12 PM Fields, Christopher J <cjf...@il...<mailto:cjf...@il...>> wrote: Scott, can you suggest any email lists where this could be sent? Thanks, chris On March 19, 2019 at 4:01:52 PM, cjf...@il...<mailto:cjf...@il...> (cjf...@il...<mailto:cjf...@il...>) wrote: <1320A798-348A-4AF7-AEC3-475B0AAD28DC.png> BOSC 2019: Bioinformatics Open Source Conference An ISMB/ECCB Community of Special Interest (COSI) BOSC 2019 Dates: July 24-25, 2019 Location: Basel, Switzerland Website: https://www.open-bio.org/wiki/BOSC_2019 (new, improved website coming soon!) Email BOSC organizers: bo...@op...<mailto:bo...@op...> BOSC announcements mailing list: http://lists.open-bio.org/mailman/listinfo/bosc-announce Twitter: @OBF_BOSC<https://twitter.com/OBF_BOSC>, #BOSC2019<https://twitter.com/search?f=tweets&vertical=default&q=%23BOSC2019&src=typd> Key Dates: April 11, 2019: Deadline for submitting talk/poster abstracts<https://www.open-bio.org/wiki/BOSC_Abstract_Submission> April 15: OBF travel fellowship<https://github.com/OBF/obf-docs/blob/master/Travel_fellowships.md> application deadline May 9: First-round authors notified about talk/poster acceptance May 15: Late poster / late-breaking lightning talk abstract deadline May 23: Late poster / late-breaking lightning talk authors notified July 21-25, 2019: ISMB/ECCB 2019<https://www.iscb.org/ismbeccb2019>, Basel, Switzerland July 24-25 (last two days of ISMB): BOSC 2019, Basel, Switzerland July 26-28: CollaborationFest (CoFest) 2019<https://www.open-bio.org/wiki/CoFest_2019>, Basel About BOSC Since 2000, the yearly Bioinformatics Open Source Conference (BOSC) has provided a forum for developers and users to interact and share research results and ideas in open source bioinformatics and open science. BOSC’s broad spectrum of topics includes practical techniques for solving bioinformatics problems; software development practices; standards and ontologies; approaches that promote open science and sharing of data, results and software; and ways to grow open source communities while promoting diversity within them. In 2018, BOSC was held jointly with GCC<https://f1000research.com/collections/BOSC?&selectedDomain=articles> as a combined GCCBOSC<https://gccbosc2018.sched.com/> conference. In 2019, BOSC will be part of ISMB/ECCB<https://www.iscb.org/ismbeccb2019> in Basel. We hope to partner with GCC again in 2020 or 2021. Read more here about why we decided to hold BOSC with GCC in 2018 and ISMB in 2019.<https://news.open-bio.org/2018/08/02/taking-turns/> ISMB now consists of multiple parallel tracks called COSIs (formerly SIGs). The BOSC COSI will take place the last two full days of ISMB (July 24-25). You can register for the full ISMB/ECCB meeting (July 21-25) or for just two days (there is no single-day registration option). A limited number of partial travel fellowships will be granted to some accepted speakers who would not otherwise be able to attend BOSC--please see https://github.com/OBF/obf-docs/blob/master/Travel_fellowships.md for more information. The travel fellowship application deadline is April 15. Abstract submission We encourage you to submit abstracts<https://www.open-bio.org/wiki/BOSC_Abstract_Submission> (due April 11) on any topic relevant to open source bioinformatics or open science. After review, some abstracts will be selected for lightning talks, longer talks and/or posters. (Only first-round abstracts are eligible for longer talks.) Abstract submission instructions and a link to the EasyChair submission portal can be found on https://www.open-bio.org/wiki/BOSC_Abstract_Submission. BOSC session topics include (but are not limited to): * Open Science and Reproducible Research * Open Biomedical Data * Citizen/Participatory Science * Standards and Interoperability * Data Science * Workflows * Open Approaches to Translational Bioinformatics * Developer Tools and Libraries * Inclusion, Outreach and Training * Bioinformatics Open Source Project Reports (about new or existing projects) We look forward to receiving your abstract and meeting you at BOSC 2019! Sincerely, BOSC 2019 Organizing Committee: Nomi Harris (chair), Heather Wiencko (co-chair), Peter Cock, Chris Fields, Bastian Greshake Tzovaras, Michael Heuer, Karsten Hokamp, Monica Munoz-Torres, Bastian Rieck, Yo Yehudi. P.S. Don't forget to submit your BOSC abstract by April 11 at https://www.open-bio.org/wiki/BOSC_Abstract_Submission ! Please share this announcement with your colleagues! — chris -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Scott C. <sc...@sc...> - 2019-03-19 22:09:51
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Do you want to send them directly or should I forward? It doesn't matter much to me: gmo...@li... gmo...@li... gmo...@li... gmo...@li... ap...@lb... Ordinarily, I'd through the intermine and galaxy mailing lists in there too, but in the case of BOSC I don't think that's necessary :-) On Tue, Mar 19, 2019 at 2:12 PM Fields, Christopher J <cjf...@il...> wrote: > Scott, can you suggest any email lists where this could be sent? > > Thanks, > > chris > > On March 19, 2019 at 4:01:52 PM, cjf...@il... ( > cjf...@il...) wrote: > > [image: BOSC_2019_Banner] > BOSC 2019: Bioinformatics Open Source Conference An ISMB/ECCB Community > of Special Interest (COSI) > > *BOSC 2019 Dates*: July 24-25, 2019 > > *Location*: Basel, Switzerland > > *Website*: https://www.open-bio.org/wiki/BOSC_2019 (new, improved > website coming soon!) > > *Email BOSC organizers*: bo...@op... > > *BOSC announcements mailing list*: > http://lists.open-bio.org/mailman/listinfo/bosc-announce > > *Twitter*: @OBF_BOSC <https://twitter.com/OBF_BOSC>, #BOSC2019 > <https://twitter.com/search?f=tweets&vertical=default&q=%23BOSC2019&src=typd> > *Key Dates*: > > *April 11, 2019:* Deadline for submitting talk/poster abstracts > <https://www.open-bio.org/wiki/BOSC_Abstract_Submission> > > *April 15:* OBF travel fellowship > <https://github.com/OBF/obf-docs/blob/master/Travel_fellowships.md> application > deadline > > *May 9:* First-round authors notified about talk/poster acceptance > > *May 15:* Late poster / late-breaking lightning talk abstract deadline > > *May 23:* Late poster / late-breaking lightning talk authors notified > > *July 21-25, 2019:* ISMB/ECCB 2019 <https://www.iscb.org/ismbeccb2019>, > Basel, Switzerland > > *July 24-25 (last two days of ISMB):* BOSC 2019, Basel, Switzerland > > *July 26-28:* CollaborationFest (CoFest) 2019 > <https://www.open-bio.org/wiki/CoFest_2019>, Basel > About BOSC > > Since 2000, the yearly Bioinformatics Open Source Conference (BOSC) has > provided a forum for developers and users to interact and share research > results and ideas in open source bioinformatics and open science. BOSC’s > broad spectrum of topics includes practical techniques for solving > bioinformatics problems; software development practices; standards and > ontologies; approaches that promote open science and sharing of data, > results and software; and ways to grow open source communities while > promoting diversity within them. > > In 2018, BOSC was held jointly with GCC > <https://f1000research.com/collections/BOSC?&selectedDomain=articles> as > a combined GCCBOSC <https://gccbosc2018.sched.com/> conference. In 2019, > BOSC will be part of ISMB/ECCB <https://www.iscb.org/ismbeccb2019> in > Basel. We hope to partner with GCC again in 2020 or 2021. Read more here > about why we decided to hold BOSC with GCC in 2018 and ISMB in 2019. > <https://news.open-bio.org/2018/08/02/taking-turns/> > > ISMB now consists of multiple parallel tracks called COSIs (formerly > SIGs). The BOSC COSI will take place the last two full days of ISMB (July > 24-25). You can register for the full ISMB/ECCB meeting (July 21-25) or for > just two days (there is no single-day registration option). > > A limited number of partial travel fellowships will be granted to some > accepted speakers who would not otherwise be able to attend BOSC--please > see https://github.com/OBF/obf-docs/blob/master/Travel_fellowships.md for > more information. The travel fellowship application deadline is *April > 15.* > Abstract submission > > We encourage you to submit abstracts > <https://www.open-bio.org/wiki/BOSC_Abstract_Submission> (*due April 11*) > on any topic relevant to open source bioinformatics or open science. After > review, some abstracts will be selected for lightning talks, longer talks > and/or posters. (Only first-round abstracts are eligible for longer talks.) > > Abstract submission instructions and a link to the EasyChair submission > portal can be found on > https://www.open-bio.org/wiki/BOSC_Abstract_Submission. > > BOSC session topics include (but are not limited to): > > - Open Science and Reproducible Research > - Open Biomedical Data > - Citizen/Participatory Science > - Standards and Interoperability > - Data Science > - Workflows > - Open Approaches to Translational Bioinformatics > - Developer Tools and Libraries > - Inclusion, Outreach and Training > - Bioinformatics Open Source Project Reports (about new or existing > projects) > > We look forward to receiving your abstract and meeting you at BOSC 2019! > > Sincerely, > > *BOSC 2019 Organizing Committee:* Nomi Harris (chair), Heather Wiencko > (co-chair), Peter Cock, Chris Fields, Bastian Greshake Tzovaras, Michael > Heuer, Karsten Hokamp, Monica Munoz-Torres, Bastian Rieck, Yo Yehudi. > > *P.S. Don't forget to submit your BOSC abstract by April 11 at* > https://www.open-bio.org/wiki/BOSC_Abstract_Submission ! > > Please share this announcement with your colleagues! > > > > — chris > > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Scott C. <sc...@sc...> - 2019-03-14 19:21:39
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Hello, I wanted to forward this to a few mailing lists where I think it might be of interest. Adhemar is proposing a new project that is a web front end to Chado based on Django be a GMOD project. Please feel free to reply to this email with comments and questions. Thanks, Scott ---------- Forwarded message --------- From: Adhemar <az...@gm...> Date: Thu, Mar 14, 2019 at 10:09 AM Subject: Nominate software: machado To: <he...@gm...> Nominate software: machado https://github.com/lmb-embrapa/machado machado is a Django2-based application that contains tools to interact with Chado databases. It provides users with a framework to store, search and visualize biological data. - Data loaders for the major bioinformatics formats: fasta, gff, obo, bibtex, blast, interproscan, orthomcl - The machado API delivers data directly to the JBrowse genome browser - The Haystack framework provides a very fast query interface using the Elasticsearch engine *Requirements for the nomination process* The development of machado was triggered by an undergoing research project at EMBRAPA, the largest public research institute on agriculture in Brazil. In this project we'll analyze over 50 genomes of plants by integrating diverse data, such as, RNA-Seq, orthology and functional annotation (blast, diamond, interproscan). As an initial approach, the project leaders chose to store data in an well-established ontology-based database (chado) using Python3 and started to develop machado with some objectives in mind: i) to have it integrated to JBrowse via API, and ii) to implement generic data loading tools to store data from some of the main bioinformatics data formats (fasta, gff, obo, bibtex, blast, interproscan, orthomcl). Future demands include the implementation of databases for mammalians species and the development of tools for additional data files such as vcf. The software is in early stage of development and there are many functionalities still remaining to be concluded, most of them related to visualization and interfaces. It is open source under the GPL license. Comprehensive documentation related to software installation/configuration and the data loading/visualization is available at http://machado.readthedocs.io We put extra efforts to make sure it's an inviting open environment in urge for new developers. It is hosted by Github and has a few quality control features, such as, continuous integration, and unit tests. The code contains type annotations and follow the coding styles specified at PEP8 (Style Guide for Python Code) and PEP20 (The Zen of Python). The Github's 'Issues' is the main communication method to inform bugs, request new functionalities and discuss code contributions. We intend to massively use it in further research projects and will be happy to support users and collaborators for the next few years. EMBRAPA is hosting a demo of machado containing only 4 genomes at http://www.machado.cnptia.embrapa.br -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Cook, M. <ME...@st...> - 2019-01-29 04:20:43
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Pro – I have used it and deployed it and integrated it with JBrowse and agree with all points Yannick raises – and it deserves more/better exposure and funding for further dev as needed. Malcolm Cook - Database Application Manager Computation Biology Group Stowers Institute for Medical Research 1000 E 50th Street Kansas City, Missouri 64110 From: Scott Cain <sc...@sc...> Sent: Monday, January 28, 2019 5:58 PM To: gmod-announce <gmo...@li...>; gmod-devel <gmo...@li...>; gmod-ajax <gmo...@li...>; gmod tripal devel <gmo...@li...>; Apollo Developers <apo...@li...>; Yannick Wurm <y....@qm...>; Anurag Priyam <anu...@gm...> Subject: [Gmod-ajax] Nomination for new GMOD project **CAUTION: Non-Stowers email** Hello GMOD, Last week, Yannick Wurm of SequenceServer fame approached me about adding SequenceServer as a GMOD project. It seems like a great fit to me as a general and widely used tool. Please take a moment to read a little about it if you aren't already familiar and if you have any thoughts (pro or con), please let me know. I included email groups of projects that I thought might be interested in SequenceServer. If you know of somebody else involved with GMOD who isn't covered by one of these lists, please feel free to forward it to them. In case you weren't aware, GMOD has guidelines for adding new projects: http://gmod.org/wiki/GMOD_Membership Here is what Yannick wrote in support of his nomination: ----------------------------------------------------------- Dear all, I would like to nominate SequenceServer as a GMOD tool. Background: A major hurdle I stumbled upon a few years ago as collaborators and I began to obtain transcriptome and genome assemblies from new species, was the lack of a simple manner of BLASTing unpublished data. Using a perl/cgi blast script was horrible - and it had a counterintuitive user interface. Same with the tool for custom databases that NCBI supplied at the time. To overcome this, Anurag Priyam (an undergraduate at the time) and I began developing SequenceServer. Its had 3 main aims: - provide an intuitive user interface and elegant user experience that increases researchers productivity - make it easy for individual users to run it autonomously on unpublished or custom data - make it easy to share a BLAST interface with others - in a lab or on a community database (including the - now deprecated antgenomes.org<http://antgenomes.org> which I ran) It was open source from the start, and has decent success: - 60,000 downloads - >50 citations. - >70 github forks and 130 stars - >190 members on mailing list It is used on dozens of GMOD-esque community sites - often in combination with jBrowse, including: reefgenomics.org<http://reefgenomics.org> http://www.daphnia-stressordb.uni-hamburg.de, hymenopterabase, http://spottedwingflybase.org , bovine genome database, Lepbase, http://www.wheat-tilling.com, PHIbase, GenomeHubs,http://pristionchus.org/about.html, http://planmine.mpi-cbg.de/planmine/begin.do, and many more. Allow me to provide specific comments regarding the GMOD membership criteria below. Please do not hesitate if you have any questions. Kind regards, Yannick ----- Meets a Common Need Growing citations & userbase demonstrate this. Useful Over Time Usage has steadily increased since 2012. The tool wraps BLAST (we are seeking funding to hopefully also wrap DIAMOND). We are implementing novel visualisations to increase analysis power/researchers productivity (including thanks to a recent GSoC). Configurable and Extensible All source code is open. Key configurable things are separated out. - e.g. can use built-tin "sinatra" web server - or go via apache or nginx (as we do on antgenomes.org<http://antgenomes.org>) - the most common customization is to add links from BLAST hits to specific databases (e.g. genome browser or other cross-ref) - this is done in a modular manner, using custom "links.rb" plugins that remain stable even when the rest of sequenceserver is upgraded. E.g. see http://gmod.org/wiki/JBrowse_FAQ#How_can_I_link_BLAST_results_to_JBrowse Open Source License for All Users GNU AGPL v3 Interoperable With Other GMOD Components All it needs is a directory of one or more FASTA files. There is no internal database (the directory is scanned on launch) - thus we don't connect to Chado. We do nothing with annotations and thus don't support GFF. (the jbrowse page actually has a decent section on linking things up - http://gmod.org/wiki/JBrowse_FAQ#How_can_I_link_BLAST_results_to_JBrowse ) Commitment of Support We've been supporting this without specfic funds since 2012 and hope to be able to continue doing so. Being part of GMOD will hopefully also help attract funding. Mailing list is here: https://groups.google.com/forum/?fromgroups#!forum/sequenceserver The code is well documented, the site and doc page are decent - http://www.sequenceserver.com and http://www.sequenceserver.com/doc/ Issue tracker is here: https://github.com/wurmlab/sequenceserver/issues We are happy to commit to continuing these efforts. We have encouraged (and attracted) code contributions in the past and will continue to do so. Users and Support Mailing List(s) https://groups.google.com/forum/?fromgroups#!forum/sequenceserver Issue tracker is here: https://github.com/wurmlab/sequenceserver/issues Public repository https://github.com/wurmlab/sequenceserver -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Scott C. <sc...@sc...> - 2019-01-28 23:58:15
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Hello GMOD, Last week, Yannick Wurm of SequenceServer fame approached me about adding SequenceServer as a GMOD project. It seems like a great fit to me as a general and widely used tool. Please take a moment to read a little about it if you aren't already familiar and if you have any thoughts (pro or con), please let me know. I included email groups of projects that I thought might be interested in SequenceServer. If you know of somebody else involved with GMOD who isn't covered by one of these lists, please feel free to forward it to them. In case you weren't aware, GMOD has guidelines for adding new projects: http://gmod.org/wiki/GMOD_Membership Here is what Yannick wrote in support of his nomination: ----------------------------------------------------------- Dear all, I would like to nominate SequenceServer as a GMOD tool. Background: A major hurdle I stumbled upon a few years ago as collaborators and I began to obtain transcriptome and genome assemblies from new species, was the lack of a simple manner of BLASTing unpublished data. Using a perl/cgi blast script was horrible - and it had a counterintuitive user interface. Same with the tool for custom databases that NCBI supplied at the time. To overcome this, Anurag Priyam (an undergraduate at the time) and I began developing SequenceServer. Its had 3 main aims: - provide an intuitive user interface and elegant user experience that increases researchers productivity - make it easy for individual users to run it autonomously on unpublished or custom data - make it easy to share a BLAST interface with others - in a lab or on a community database (including the - now deprecated antgenomes.org which I ran) It was open source from the start, and has decent success: - 60,000 downloads - >50 citations. - >70 github forks and 130 stars - >190 members on mailing list It is used on dozens of GMOD-esque community sites - often in combination with jBrowse, including: reefgenomics.org http://www.daphnia-stressordb.uni-hamburg.de, hymenopterabase, http://spottedwingflybase.org , bovine genome database, Lepbase, http://www.wheat-tilling.com, PHIbase, GenomeHubs, http://pristionchus.org/about.html, http://planmine.mpi-cbg.de/planmine/begin.do, and many more. Allow me to provide specific comments regarding the GMOD membership criteria below. Please do not hesitate if you have any questions. Kind regards, Yannick ----- Meets a Common Need Growing citations & userbase demonstrate this. Useful Over Time Usage has steadily increased since 2012. The tool wraps BLAST (we are seeking funding to hopefully also wrap DIAMOND). We are implementing novel visualisations to increase analysis power/researchers productivity (including thanks to a recent GSoC). Configurable and Extensible All source code is open. Key configurable things are separated out. - e.g. can use built-tin "sinatra" web server - or go via apache or nginx (as we do on antgenomes.org) - the most common customization is to add links from BLAST hits to specific databases (e.g. genome browser or other cross-ref) - this is done in a modular manner, using custom "links.rb" plugins that remain stable even when the rest of sequenceserver is upgraded. E.g. see http://gmod.org/wiki/JBrowse_FAQ#How_can_I_link_BLAST_results_to_JBrowse Open Source License for All Users GNU AGPL v3 Interoperable With Other GMOD Components All it needs is a directory of one or more FASTA files. There is no internal database (the directory is scanned on launch) - thus we don't connect to Chado. We do nothing with annotations and thus don't support GFF. (the jbrowse page actually has a decent section on linking things up - http://gmod.org/wiki/JBrowse_FAQ#How_can_I_link_BLAST_results_to_JBrowse ) Commitment of Support We've been supporting this without specfic funds since 2012 and hope to be able to continue doing so. Being part of GMOD will hopefully also help attract funding. Mailing list is here: https://groups.google.com/forum/?fromgroups#!forum/sequenceserver The code is well documented, the site and doc page are decent - http://www.sequenceserver.com and http://www.sequenceserver.com/doc/ Issue tracker is here: https://github.com/wurmlab/sequenceserver/issues We are happy to commit to continuing these efforts. We have encouraged (and attracted) code contributions in the past and will continue to do so. Users and Support Mailing List(s) https://groups.google.com/forum/?fromgroups#!forum/sequenceserver Issue tracker is here: https://github.com/wurmlab/sequenceserver/issues Public repository https://github.com/wurmlab/sequenceserver -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Scott C. <sc...@sc...> - 2019-01-23 18:25:26
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---------- Forwarded message --------- From: Robin Haw <Rob...@oi...> Date: Wed, Jan 23, 2019 at 10:20 AM Subject: [GSoC 2019] [Open Genome Informatics] Google Summer of Code 2019 Participation To: gmo...@li... <gmo...@li...> Cc: Dannon Baker <dan...@gm...>, Dave Clements < cle...@ga...>, Marc Gillespie <gil...@st...>, Scott Cain <sc...@sc...> Dear All, The Open Genome Informatics team serves as an “umbrella" organization to support the efforts of many open access open-source bioinformatics projects for Google Summer of Code (GSoC) <https://summerofcode.withgoogle.com/>. Among this list of projects are GMOD and its software projects -- GBrowse, JBrowse; Galaxy; Reactome; WormBase; DockStore; Bioconda; and others. Call for 2019 Project Ideas and Mentors: We are seeking project ideas to post and attract talented students to this year’s Summer of Code competition. If you have a project idea for which you would like to mentor a student, please contact Robin Haw, Marc Gillespie, Dave Clements, Dannon Baker, and Scott Cain (emails above). You can also submit your ideas here <http://gmod.org/wiki/GSOC_Project_Ideas_2019> or this online form <https://docs.google.com/forms/d/1uQlpsbPCnhNwO5OFKAB-IiY9DLWlmaHZATnaeP6KHhw>. For more information please refer to the Open Genome Informatics page <http://gmod.org/wiki/GSoC>. The mentoring organization application deadline with GSoC is February 6th, 2019 at 3 pm EST. So, if you are interested in taking part with the team please let us know as soon as possible. Please forward this to others who might be interested in taking part. If you have any questions please let us know. Thanks, Robin, Marc, Dave, Dannon, and Scott. -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Scott C. <sc...@sc...> - 2018-08-03 20:47:38
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Hi All, So I'm thinking having Chado 1.4 out for PAG would be a good idea, and since it feels like I devote about a day month to thinking about Chado, it's about time to really get started. So, starting with the current status, there are 4 pull requests outstanding: https://github.com/GMOD/Chado/pulls (I just pulled a few others that I was pretty confident in.) These four seem pretty reasonable to me, but I'll leave them out for a little while, as we work through the issues. There are 24 open issues with the tag "Chado 1.4 suggestion": https://github.com/GMOD/Chado/issues?q=is%3Aissue+is%3Aopen+label%3A%22Chado+1.4+Suggestion%22 most of which have several comments and several have some code. My primary tasks for the 1.4 release is rewriting the build and installation code. I think the installation code will remain Makefile.PL-based, but it could certainly be modernized. The build code will probably require a fair amount of reworking so that we can get away from the perl-Tk code which is quite the albatross when it comes to building releases. So, does anybody have any other issues that should be considered for a 1.4 release? Thanks, Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Stephen F. <spf...@gm...> - 2018-05-04 18:56:13
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Hi Scott, There is a Tripal Docker image geared towards "production" sites here: https://github.com/erasche/docker-tripal On 5/4/2018 7:35 AM, Scott Cain wrote: > Hi All, > > I'm thinking about creating a new GMOD in the Cloud to replace the now > very old one. Since technology has advanced quite a bit since I last > did this, I'm thinking I might be able to use docker to do it all. > This instance would contain Chado, Tripal, JBrowse and Apollo. Are > there "canonical" docker images for all of these? I assume I'll > probably want to modify them to work together in a nice way, but > having a good starting point would be nice. > > Also, do you have any suggestions for what else should be included? I > figured I would put in some yeast sample data, but having some sample > data that could be edited by Apollo and be integrated into Tripal > would be really nice. > > Thanks, > Scott > > > -- > ------------------------------------------------------------------------ > Scott Cain, Ph. D. scott at > scottcain dot net > GMOD Coordinator (http://gmod.org/) 216-392-3087 > Ontario Institute for Cancer Research > > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > > > _______________________________________________ > Gmod-tripal-devel mailing list > Gmo...@li... > https://lists.sourceforge.net/lists/listinfo/gmod-tripal-devel |
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From: Scott C. <sc...@sc...> - 2018-05-04 14:35:44
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Hi All, I'm thinking about creating a new GMOD in the Cloud to replace the now very old one. Since technology has advanced quite a bit since I last did this, I'm thinking I might be able to use docker to do it all. This instance would contain Chado, Tripal, JBrowse and Apollo. Are there "canonical" docker images for all of these? I assume I'll probably want to modify them to work together in a nice way, but having a good starting point would be nice. Also, do you have any suggestions for what else should be included? I figured I would put in some yeast sample data, but having some sample data that could be edited by Apollo and be integrated into Tripal would be really nice. Thanks, Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research |
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From: Stephen F. <spf...@gm...> - 2017-05-30 22:42:30
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Dear Tripal User's. Typically we have a monthly call-in meeting for everyone to chat about Tripal core development, sharing of ideas, discussion of extension modules, etc. I would like to propose that we pause these meetings until September. Our next meeting would have been this Friday, June 2nd, but those of us working on the Tripal core code are actively trying to get the Tripal v3 release out within the next few weeks, and we would like the time. Also, we typically have a lower attendance in the summer due to travels and I myself will not be able to make the July meeting and most likely will not have the time to prepare for the August meeting. If there are any objections to reconvening in September please let us know and perhaps we can work something out. Also, as we discussed in previous meetings, we will be shutting down the *gmo...@li...* and the *gmo...@so...* mailing lists. Those lists will not go away completely. Archives will be available, but we will stop advertising and using them. We will keep the *gmo...@li...* mailing list (this one) to send announcements only. So please stay subscribed for those! In the past this list has served for folks to ask for help or report problems. From this point on we'd like to ask that if you have questions or problems with Tripal that those discussion be submitted to the Tripal Issue queue at https://github.com/tripal/tripal/issues. This is better way for us to keep track of questions and issues. Thanks much! Stephen |
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From: Victor U. <ll...@gm...> - 2017-05-01 22:46:38
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Dear Tripal Developers and Users, I hope everyone is doing great. We will have our monthly Tripal Developer and User meeting this Friday, May 5th. The meeting is open for everyone. If you have not previously attended, please consider attending especially if you are considering development of custom extensions. The goal of the meeting is to share news about Tripal, provide an opportunity to share ideas, ask questions, provide training, and to advertise what you are doing. The meeting start time and connection details follow below. The meeting will take approximately one hour. Below is the link to the agenda for the upcoming meeting. If you have something you'd like to discuss please add it (and include your name): Tripal User's Meeting May/05/2017: https://docs.google.com/document/d/1nMdkrT9HWbXGGxMsffprUtOhLPZqWQfZNDlUU-4fep8/edit?usp=sharing If you want to check our last meeting notes for the Tripal User's Meeting, please visit this link: http://tripal.info/meetings/users/summary Best, Victor Unda Pacific Time, PT PST (UTC -7) Fri, May 5, 2017 8:00 am Central European Time, CEST (UTC +1) Fri, May 5, 2017 4:00 pm Eastern Time, ET EST (UTC -4) Fri, May 5, 2017 11:00 am Central Time, CT CST (UTC -5) Fri, May 5, 2017 10:00 am Regina, Canada CST (UTC -6) Fri, May 5, 2017 9:00 am China Standard Time, CST (UTC +8) Fri, May 5, 2017 11:00 pm Connection Details: Please join my meeting from your computer, tablet or smartphone. https://global.gotomeeting.com/join/762905221 You can also dial in using your phone. United States: +1 (312) 757-3121 Access Code: 762-905-221 |
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From: Sofia R. <so...@so...> - 2017-04-25 19:34:36
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Thanks, I will look over the changes to see if I can work it out now. Thank you!! On Tue, Apr 25, 2017 at 11:49 AM, Stephen Ficklin <ste...@ws...> wrote: > Hi Sofia, > > I did update the online tutorial to match the v2.1 changes in the bulk > loader, and it was that same tutorial that we went through. We also > examined a data set provided by Michael Dondrup's group and discussed the > different options for loading that file. But unfortunately there are no > additional notes other than the tutorial. If you want some one-on-one help > just let us know and we'll see what we can organize for you. > > Stephen > > On 4/24/2017 9:17 AM, Sofia Robb wrote: > > Hi Stephen, > > I was unfortunately unable to call in for this training :( I really > wanted to learn all about the bulk loader. Are there any notes? I have > tried following the info on the tripal site in the past, but could never > figure out how to make what I wanted to do work. Any additional information > would be extremely useful!! > > Thanks! > Sofia > > > On Fri, Apr 21, 2017 at 11:00 AM, Stephen Ficklin <spf...@gm...> > wrote: > >> Hi All, >> >> Well, there's really not a party. I just wanted to say thanks to those >> who attended our training session on the bulk loader. Please feel free >> to send along comments or suggestions for improvement. >> >> Also, there are two items we failed to cover which I should have >> mentioned in the training: >> >> 1) If you have a column in your input file and you only need a portion >> of the text in that column, you can use regular expressions to pull out >> only the part you need. And you can even rewrite values that might not >> be exactly the way you want them. This is under the advanced options >> when creating a field. >> >> 2) We should have demo'ed what happens when the loader doesn't work >> when the person who creates a template makes a mistake. You get some >> error messages on the terminal. >> >> If you have questions about any of these please feel free to ask. >> >> Best, >> Stephen >> >> >> ------------------------------------------------------------ >> ------------------ >> Check out the vibrant tech community on one of the world's most >> engaging tech sites, Slashdot.org! http://sdm.link/slashdot >> _______________________________________________ >> Gmod-tripal mailing list >> Gmo...@li... >> https://lists.sourceforge.net/lists/listinfo/gmod-tripal >> > > > > -- > Stephen Ficklin, PhD > Assistant Professor > Bioinformatics and Systems Genetics > Department of Horticulture > Washington State University > 153 Johnson Hall > Pullman, WA 99164-6414 > Office: (509) 335-4295 > > |
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From: Stephen F. <ste...@ws...> - 2017-04-25 17:49:32
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Hi Sofia, I did update the online tutorial to match the v2.1 changes in the bulk loader, and it was that same tutorial that we went through. We also examined a data set provided by Michael Dondrup's group and discussed the different options for loading that file. But unfortunately there are no additional notes other than the tutorial. If you want some one-on-one help just let us know and we'll see what we can organize for you. Stephen On 4/24/2017 9:17 AM, Sofia Robb wrote: > Hi Stephen, > > I was unfortunately unable to call in for this training :( I really > wanted to learn all about the bulk loader. Are there any notes? I have > tried following the info on the tripal site in the past, but could > never figure out how to make what I wanted to do work. Any additional > information would be extremely useful!! > > Thanks! > Sofia > > > On Fri, Apr 21, 2017 at 11:00 AM, Stephen Ficklin <spf...@gm... > <mailto:spf...@gm...>> wrote: > > Hi All, > > Well, there's really not a party. I just wanted to say thanks to > those > who attended our training session on the bulk loader. Please feel free > to send along comments or suggestions for improvement. > > Also, there are two items we failed to cover which I should have > mentioned in the training: > > 1) If you have a column in your input file and you only need a > portion > of the text in that column, you can use regular expressions to > pull out > only the part you need. And you can even rewrite values that > might not > be exactly the way you want them. This is under the advanced options > when creating a field. > > 2) We should have demo'ed what happens when the loader doesn't work > when the person who creates a template makes a mistake. You get some > error messages on the terminal. > > If you have questions about any of these please feel free to ask. > > Best, > Stephen > > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > Gmod-tripal mailing list > Gmo...@li... > <mailto:Gmo...@li...> > https://lists.sourceforge.net/lists/listinfo/gmod-tripal > <https://lists.sourceforge.net/lists/listinfo/gmod-tripal> > > -- Stephen Ficklin, PhD Assistant Professor Bioinformatics and Systems Genetics Department of Horticulture Washington State University 153 Johnson Hall Pullman, WA 99164-6414 Office: (509) 335-4295 |
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From: Sofia R. <so...@so...> - 2017-04-24 16:17:41
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Hi Stephen, I was unfortunately unable to call in for this training :( I really wanted to learn all about the bulk loader. Are there any notes? I have tried following the info on the tripal site in the past, but could never figure out how to make what I wanted to do work. Any additional information would be extremely useful!! Thanks! Sofia On Fri, Apr 21, 2017 at 11:00 AM, Stephen Ficklin <spf...@gm...> wrote: > Hi All, > > Well, there's really not a party. I just wanted to say thanks to those > who attended our training session on the bulk loader. Please feel free > to send along comments or suggestions for improvement. > > Also, there are two items we failed to cover which I should have > mentioned in the training: > > 1) If you have a column in your input file and you only need a portion > of the text in that column, you can use regular expressions to pull out > only the part you need. And you can even rewrite values that might not > be exactly the way you want them. This is under the advanced options > when creating a field. > > 2) We should have demo'ed what happens when the loader doesn't work > when the person who creates a template makes a mistake. You get some > error messages on the terminal. > > If you have questions about any of these please feel free to ask. > > Best, > Stephen > > > ------------------------------------------------------------ > ------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > Gmod-tripal mailing list > Gmo...@li... > https://lists.sourceforge.net/lists/listinfo/gmod-tripal > |
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From: Stephen F. <spf...@gm...> - 2017-04-21 17:00:14
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Hi All, Well, there's really not a party. I just wanted to say thanks to those who attended our training session on the bulk loader. Please feel free to send along comments or suggestions for improvement. Also, there are two items we failed to cover which I should have mentioned in the training: 1) If you have a column in your input file and you only need a portion of the text in that column, you can use regular expressions to pull out only the part you need. And you can even rewrite values that might not be exactly the way you want them. This is under the advanced options when creating a field. 2) We should have demo'ed what happens when the loader doesn't work when the person who creates a template makes a mistake. You get some error messages on the terminal. If you have questions about any of these please feel free to ask. Best, Stephen |
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From: Stephen F. <spf...@gm...> - 2017-04-20 22:58:57
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Dear Tripal folks, Currently on our tripal.info site we have logos for WSU and U. Saskatchewan as the core Tripal developers are in these locations. However, we want to recognize all of the contribution that our community members make. If you contribute bug fixes/pull requests or develop extension modules that you are currently sharing to the rest of the Tripal community and if you'd like us to recognize your contribution via a logo on our website can you please send me (off the list) an official logo image for your institution and a URL that you'd like that logo to link to? Thank you! Stephen |
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From: Stephen F. <spf...@gm...> - 2017-04-20 15:39:12
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Greetings! Tomorrow we will have our online training workshop. The training topic is use of the Chado bulk loader for importing data stored in tab-delimited text files. All are welcome to attend. Below you can find connection details for our online training meeting. The meeting begins at 8am Pacific Daylight Time and the same time in these time zones: Beijing, China Fri, Apr 21, 2017 at 11:00 pm CST Oslo, Norway Fri, Apr 21, 2017 at 5:00 pm CEST Paris, France Fri, Apr 21, 2017 at 5:00 pm CEST New York, USA Fri, Apr 21, 2017 at 11:00 am EDT Des Moines, USA Fri, Apr 21, 2017 at 10:00 am CDT Saskatoon, Canada Fri, Apr 21, 2017 at 9:00 am CST Seattle, USA Fri, Apr 21, 2017 at 8:00 am PDT Please join my meeting from your computer, tablet or smartphone. https://global.gotomeeting.com/join/762905221 You can also dial in using your phone. United States: +1 (312) 757-3121 Access Code:762-905-221 First GoToMeeting? Try a test session:http://help.citrix.com/getready |
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From: Stephen F. <spf...@gm...> - 2017-04-12 01:42:12
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Hi All, Are there any objections if we move the training session on the bulk loader to Friday April 21st at 8am Pacific time? This would be to accommodate a group that would like to attend. Thanks! Stephen |
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From: Victor U. <ll...@gm...> - 2017-04-04 02:39:33
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Hello everyone, There is a small error at the end of the email I sent earlier for our meeting this Friday April 7. Please re-check the times below. Sorry for the inconvenience. Pacific Time, PT PST (UTC -7) Fri, April 7, 2017 8:00 am Central European Time, CEST (UTC +2) Fri, April 7, 2017 5:00 pm Eastern Time, ET EST (UTC -4) Fri, April 7, 2017 11:00 am Central Time, CT CST (UTC -5) Fri, April 7, 2017 10:00 am Regina, Canada CST (UTC -6) Fri, April 7, 2017 9:00 am China Standard Time, CST (UTC +8) Fri, April 7, 2017 11:00pm Thank you, Victor-- |
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From: Unda, V. <vu...@ws...> - 2017-04-03 23:50:21
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Dear Tripal Developers and Users, I hope everyone is doing great. We will have our monthly Tripal Developer and User meeting this Friday, April 7th. The meeting is open for everyone. If you have not previously attended, please consider attending especially if you are considering development of custom extensions. The goal of the meeting is to share news about Tripal, provide an opportunity to share ideas, ask questions, provide training, and to advertise what you are doing. The meeting start time and connection details follow below. The meeting will take approximately one hour. Below is the link to the agenda for the upcoming meeting. If you have something you'd like to discuss please add it (and include your name): Tripal User's Meeting April/07/2017: https://docs.google.com/document/d/1WMuzjrAOCOJfOEg9ZW8ywEr3B7vofCoHvOI0vDxn5D8/edit?usp=sharing<https://urldefense.proofpoint.com/v2/url?u=https-3A__docs.google.com_document_d_1WMuzjrAOCOJfOEg9ZW8ywEr3B7vofCoHvOI0vDxn5D8_edit-3Fusp-3Dsharing&d=DwMFAg&c=C3yme8gMkxg_ihJNXS06ZyWk4EJm8LdrrvxQb-Je7sw&r=IgTeSNohJJLqxRy-1sJO1A&m=ZlrD2DxvoSM_0BBHOqAdsf60yhblUpOPVOFUDz72WSo&s=wisRHQR4bq-yFbtdbZAj3XHkUXkWFRUH4g4x82gp04o&e=> If you want to check our last meeting notes for the Tripal User's Meeting, please visit this link: http://tripal.info/meetings/users/summary<https://urldefense.proofpoint.com/v2/url?u=http-3A__tripal.info_meetings_users_summary&d=DwMFAg&c=C3yme8gMkxg_ihJNXS06ZyWk4EJm8LdrrvxQb-Je7sw&r=IgTeSNohJJLqxRy-1sJO1A&m=ZlrD2DxvoSM_0BBHOqAdsf60yhblUpOPVOFUDz72WSo&s=71y0oEYATfrqAW3IwuTAgUiuSBLXW0soxvJGIpxv-uk&e=> Victor Unda-- ---- Pacific Time, PT PST (UTC -7) Fri, April 7, 2017 8:00 am Central European Time, CET CET (UTC +1) Fri, April 7, 2017 4:00 pm Eastern Time, ET EST (UTC -4) Fri, April 7, 2017 11:00 am Central Time, CT CST (UTC -5) Fri, April 7, 2017 10:00 am Regina, Canada CST (UTC -6) Fri, April 7, 2017 9:00 am Pacific Standard Time, PST PST (UTC -8) Fri, April 7, 2017 7:00 am China Standard Time, CST CST (UTC +8) Sat, April 7, 2017 11:00 midn Connection Details: Please join my meeting from your computer, tablet or smartphone. https://global.gotomeeting.com/join/762905221<https://urldefense.proofpoint.com/v2/url?u=https-3A__global.gotomeeting.com_join_762905221&d=DwMFAg&c=C3yme8gMkxg_ihJNXS06ZyWk4EJm8LdrrvxQb-Je7sw&r=IgTeSNohJJLqxRy-1sJO1A&m=ZlrD2DxvoSM_0BBHOqAdsf60yhblUpOPVOFUDz72WSo&s=xjNOoXgr7WR4CbhQZ_pLCYgKcZ7owchzFgXI8LibFn0&e=> You can also dial in using your phone. United States: +1 (312) 757-3121 Access Code: 762-905-221 |
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