[Gmod-schema-cmts] schema/chado/lib/Bio/GMOD/DB Adapter.pm, 1.26, 1.27 Config.pm, 1.4, 1.5

[Scott C. <sco...@us...>]

Update of /cvsroot/gmod/schema/chado/lib/Bio/GMOD/DB
In directory sc8-pr-cvs2.sourceforge.net:/tmp/cvs-serv12471

Modified Files:
	Adapter.pm Config.pm 
Log Message:
flushing temp file handles to make sure we get all of the content


Index: Config.pm
===================================================================
RCS file: /cvsroot/gmod/schema/chado/lib/Bio/GMOD/DB/Config.pm,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** Config.pm	9 Sep 2004 14:23:41 -0000	1.4
--- Config.pm	29 Aug 2006 02:21:03 -0000	1.5
***************
*** 32,36 ****
  use File::Spec::Functions qw/ catdir catfile /;
  use vars '@ISA';
! @ISA = qw/ Bio::GMOD::Config /;
  
  
--- 32,36 ----
  use File::Spec::Functions qw/ catdir catfile /;
  use vars '@ISA';
! use base qw/ Bio::GMOD::Config /;
  
  

Index: Adapter.pm
===================================================================
RCS file: /cvsroot/gmod/schema/chado/lib/Bio/GMOD/DB/Adapter.pm,v
retrieving revision 1.26
retrieving revision 1.27
diff -C2 -d -r1.26 -r1.27
*** Adapter.pm	3 Aug 2006 20:10:51 -0000	1.26
--- Adapter.pm	29 Aug 2006 02:21:02 -0000	1.27
***************
*** 2195,2198 ****
--- 2195,2203 ----
  
    foreach my $table (@tables) {
+     $self->file_handles($files{$table})->autoflush;
+     if (-s $self->file_handles($files{$table})->filename <= 4) {
+         warn "Skipping $table table since the load file is empty...\n";
+         next;
+     }
      $self->copy_from_stdin($table,
                      $copystring{$table},