[Gmod-schema-cmts] schema/chado chado-module-metadata.xml,1.14,1.15

[Scott C. <sco...@us...>]

Update of /cvsroot/gmod/schema/chado
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv31292

Modified Files:
	chado-module-metadata.xml 
Log Message:
I belive the metadata file is up to date with respect to plpgsql functions
that are in cvs, and I updated the default schema to contain all of them.  I also
added a SET search_path = public; to the frange file to prevent possible conflicts


Index: chado-module-metadata.xml
===================================================================
RCS file: /cvsroot/gmod/schema/chado/chado-module-metadata.xml,v
retrieving revision 1.14
retrieving revision 1.15
diff -C2 -d -r1.14 -r1.15
*** chado-module-metadata.xml	28 Dec 2005 21:39:32 -0000	1.14
--- chado-module-metadata.xml	29 Dec 2005 18:30:02 -0000	1.15
***************
*** 233,236 ****
--- 233,296 ----
        </component>
  
+       <component id='sequence-loading-api' type='dbapi'>
+         <description>
+           A DBMS API for loading feature tables
+         </description>
+         <source type='sqli' path='sequence/functions/sequence-loading.plpgsql'/>
+       </component>
+ 
+       <component id='sequence-loading' type='code'>
+         <description>
+           Postgres code for loading feature tables
+         </description>
+         <implements to='sequence-loading-api' />
+         <source type='plpgsql' path='sequence/functions/sequence-loading.plpgsql'/>
+       </component>
+ 
+       <component id='subsequence-api' type='dbapi'>
+         <description>
+           A DBMS API for doing subsequence queries
+         </description>
+         <source type='sqli' path='sequence/functions/subsequence.sqlapi'/>
+       </component>
+ 
+       <component id='subsequence' type='code'>
+         <description>
+           Postgres code for doing subsequence queries
+         </description>
+         <implements to='subsequence-api' />
+         <source type='plpgsql' path='sequence/functions/subsequence.plpgsql'/>
+       </component>
+ 
+       <component id='feature_subalignments' type='code'>
+         <description>
+           Postgres code for doing something with feature subalignments,
+           but I don't remember what.  Allen?
+         </description>
+         <source type='plpgsql' path='sequence/functions/feature_subalignments.plpgsql'/>
+       </component>
+ 
+       <component id='frange' type='code'>
+         <description>
+           Postgres code for fast feature 'contains' query, requried
+           for the DAS2 server (right?)
+         </description>
+         <source type='plpgsql' path='sequence/functions/frange.plpgsql'/>
+       </component>
+ 
+       <component id='create_soi' type='code'>
+         <description>
+           Postgres code to flatten feature relationships; it is in some
+           ways similar to frange.
+         </description>
+         <source type='plpgsql' path='sequence/functions/create_soi.plpgsql'/>
+       </component>
+ 
+       <component id='feature_ids_fx' type='code'>
+         <description>
+           Postgres code to simplify feature relationship queries
+         </description>
+         <source type='plpgsql' path='sequence/functions/feature_ids_fx.plpgsql'/>
+       </component>
      </module>