[Gmod-schema-cmts] schema/chado/modules/sequence/functions sequtil.plpgsql,1.2,1.3

[Scott C. <sco...@us...>]

Update of /cvsroot/gmod/schema/chado/modules/sequence/functions
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv6614/modules/sequence/functions

Modified Files:
	sequtil.plpgsql 
Log Message:
adding the ability to do sub components in the Tk tool and adding a dependency on gencode for the sequence-dbapi, and fixing a problem with function declaration ordering in sequtil.plpgsql


Index: sequtil.plpgsql
===================================================================
RCS file: /cvsroot/gmod/schema/chado/modules/sequence/functions/sequtil.plpgsql,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** sequtil.plpgsql	25 Jul 2005 21:19:35 -0000	1.2
--- sequtil.plpgsql	27 Dec 2005 20:58:30 -0000	1.3
***************
*** 27,35 ****
  LANGUAGE 'sql';
  
- -- DNA to AA, default genetic code
- CREATE OR REPLACE FUNCTION translate_dna(TEXT) RETURNS TEXT AS 
-  'SELECT translate_dna($1,1)'
- LANGUAGE 'sql';
- 
  -- DNA to AA
  CREATE OR REPLACE FUNCTION translate_dna(TEXT,INT) RETURNS TEXT AS 
--- 27,30 ----
***************
*** 57,60 ****
--- 52,61 ----
  language plpgsql;
  
+ -- DNA to AA, default genetic code
+ CREATE OR REPLACE FUNCTION translate_dna(TEXT) RETURNS TEXT AS
+  'SELECT translate_dna($1,1)'
+ LANGUAGE 'sql';
+ 
+ 
  CREATE OR REPLACE FUNCTION translate_codon(TEXT,INT) RETURNS CHAR AS
   'SELECT aa FROM genetic_code.gencode_codon_aa WHERE codon=$1 AND gencode_id=$2'