[Gmod-schema-cmts] schema/chado INSTALL,1.28,1.29 MANIFEST,1.13,1.14 Makefile.PL,1.66,1.67

[Scott C. <sco...@us...>]

Update of /cvsroot/gmod/schema/chado
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26912

Modified Files:
	INSTALL MANIFEST Makefile.PL 
Log Message:
grammer fix to INSTALL, updating MANIFEST and Mafefile.PL preparing for release


Index: Makefile.PL
===================================================================
RCS file: /cvsroot/gmod/schema/chado/Makefile.PL,v
retrieving revision 1.66
retrieving revision 1.67
diff -C2 -d -r1.66 -r1.67
*** Makefile.PL	2 Jul 2004 05:33:13 -0000	1.66
--- Makefile.PL	16 Jul 2004 17:31:23 -0000	1.67
***************
*** 502,506 ****
  #    'NAME'		            => 'chado',
      'NAME'                => 'gmod',
!     'VERSION'             => 0.002,
      'PREREQ_PM'		        => { 
        #'SQL::Translator'   => 0.05,
--- 502,506 ----
  #    'NAME'		            => 'chado',
      'NAME'                => 'gmod',
!     'VERSION'             => 0.003,
      'PREREQ_PM'		        => { 
        #'SQL::Translator'   => 0.05,

Index: INSTALL
===================================================================
RCS file: /cvsroot/gmod/schema/chado/INSTALL,v
retrieving revision 1.28
retrieving revision 1.29
diff -C2 -d -r1.28 -r1.29
*** INSTALL	16 Jul 2004 16:21:01 -0000	1.28
--- INSTALL	16 Jul 2004 17:31:23 -0000	1.29
***************
*** 7,11 ****
  considered alpha software, so expect there to be bumps in the road.  When
  you experience problems, please email them to the gmod-devel mailing list
! at gmo...@li....  This release is will work with the
  most recent release of the Generic Genome Browser (gbrowse) version 1.62,
  which has had several improvements to its chado adaptor since the last 
--- 7,11 ----
  considered alpha software, so expect there to be bumps in the road.  When
  you experience problems, please email them to the gmod-devel mailing list
! at gmo...@li....  This release will work with the
  most recent release of the Generic Genome Browser (gbrowse) version 1.62,
  which has had several improvements to its chado adaptor since the last 

Index: MANIFEST
===================================================================
RCS file: /cvsroot/gmod/schema/chado/MANIFEST,v
retrieving revision 1.13
retrieving revision 1.14
diff -C2 -d -r1.13 -r1.14
*** MANIFEST	16 Jul 2004 03:41:40 -0000	1.13
--- MANIFEST	16 Jul 2004 17:31:23 -0000	1.14
***************
*** 1,4 ****
- bin/AutoDBI.PL
  bin/addcascades
  bin/ddltrans
  bin/make_cvtermpath.pl
--- 1,4 ----
  bin/addcascades
+ bin/AutoDBI.PL
  bin/ddltrans
  bin/make_cvtermpath.pl
***************
*** 12,16 ****
--- 12,19 ----
  bin/test_load.sh
  bin/ucsc_genes2gff.pl
+ bin/ucsc_snp2gff.pl
  Changes
+ Changes.GMOD
+ doc/chado-policy.txt
  doc/Chado_Schema_Documentation.doc
  doc/ChadoCSHMay03Slides.pdf
***************
*** 20,34 ****
  doc/snps.txt
  INSTALL
! lib/Chado/Builder.pm
! lib/Chado/Config.pm
  lib/Bio/GMOD/Config.pm
  lib/Bio/GMOD/DB/Config.pm
  load/bin/genbank2gff3.PLS
  load/bin/load_gff3.PLS
  load/bin/load_ontology.PLS
  load/Build.PL
  load/etc/initialize.sql
  load/etc/log.conf
- load/logs/load.log
  load/tt2/load.conf.tt2
  load/tt2/LoadDBI.tt2
--- 23,49 ----
  doc/snps.txt
  INSTALL
! install_util/conf_install.pl
! install_util/conf_install.PLS
! install_util/install.pm
! install_util/src_install.pl
! install_util/src_install.PLS
  lib/Bio/GMOD/Config.pm
  lib/Bio/GMOD/DB/Config.pm
+ lib/Bio/GMOD/Load.pm
+ lib/Bio/GMOD/Load/GFF.pm
+ lib/Bio/GMOD/Util.pm
+ lib/Chado/Builder.pm
+ lib/Chado/Config.pm
+ LICENSE
+ load/bin/bulk_load_gff3.pl
  load/bin/genbank2gff3.PLS
+ load/bin/load_affymetrix.pl
+ load/bin/load_affyxls.pl
  load/bin/load_gff3.PLS
  load/bin/load_ontology.PLS
  load/Build.PL
+ load/etc/extra.sql
  load/etc/initialize.sql
  load/etc/log.conf
  load/tt2/load.conf.tt2
  load/tt2/LoadDBI.tt2
***************
*** 36,40 ****
  MANIFEST			This list of files
  MANIFEST.SKIP
- modules/default_schema.sql
  modules/audit/audit.doc
  modules/audit/make_audit_ddl
--- 51,54 ----
***************
*** 51,55 ****
--- 65,71 ----
  modules/companalysis/examples/basic/interpro.xml
  modules/cv/bridges/godb-bridge.sql
+ modules/cv/cv-intro.txt
  modules/cv/cv.sql
+ modules/default_schema.sql
  modules/expression/expression.sql
  modules/expression/rad.oracle
***************
*** 68,74 ****
  modules/organism/organism.sql
  modules/pub/pub.sql
- modules/sequence/bdgp/bdgp-views.sql
- modules/sequence/bdgp/README
- modules/sequence/bdgp/so-views.sql
  modules/sequence/examples/examples.txt
  modules/sequence/examples/gene_split/index.html
--- 84,87 ----
***************
*** 83,87 ****
  modules/sequence/gff-bridge/sequence-gff-views.sql
  modules/sequence/seq_triggers.sql
- modules/sequence/seq_triggers.sql~
  modules/sequence/sequence.pgfunc
  modules/sequence/sequence.sql
--- 96,99 ----
***************
*** 91,114 ****
  README.gene_expression
  README.H_sapiens
- src/mysql/Chado/Cvpath.pm
- src/mysql/Chado/Cvrelationship.pm
- src/mysql/Chado/Cvterm.pm
- src/mysql/Chado/Cvterm_Dbxref.pm
- src/mysql/Chado/Db.pm
- src/mysql/Chado/DBI.pm
- src/mysql/Chado/Dbxref.pm
- src/mysql/Chado/Egroup.pm
- src/mysql/Chado/Eplatform.pm
- src/mysql/Chado/Expression.pm
- src/mysql/Chado/Expression_Cel.pm
- src/mysql/Chado/Expression_Cvterm.pm
- src/mysql/Chado/Expression_Egroup.pm
- src/mysql/Chado/Feature.pm
- src/mysql/Chado/Feature_Cvterm.pm
- src/mysql/Chado/Feature_Dbxref.pm
- src/mysql/Chado/Feature_Expression.pm
- src/mysql/Chado/Feature_Expression_Cel.pm
- src/mysql/Chado/Feature_Expression_Dchipxls.pm
- src/mysql/Chado/Featureprop.pm
  src/test/perl/Bio/XML/Sequence/Fasta.pm
  src/test/perl/Bio/XML/Sequence/Gff.pm
--- 103,106 ----
***************
*** 121,123 ****
--- 113,117 ----
  src/test/perl/t/data/bf.itxt
  src/test/README
+ t/01_okay.t
  TODO
+ META.yml                                 Module meta-data (added by MakeMaker)