[Gmod-schema-cmts] schema/chado INSTALL,1.12,1.13

[<sco...@us...>]

Update of /cvsroot/gmod/schema/chado
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26713

Modified Files:
	INSTALL 
Log Message:
clarifying doc for adding to organism table


Index: INSTALL
===================================================================
RCS file: /cvsroot/gmod/schema/chado/INSTALL,v
retrieving revision 1.12
retrieving revision 1.13
diff -C2 -d -r1.12 -r1.13
*** INSTALL	7 Jan 2004 21:09:17 -0000	1.12
--- INSTALL	11 Feb 2004 16:50:12 -0000	1.13
***************
*** 197,204 ****
      Loads GFF file.  Note that this command will fail unless you add 
      fruitfly to the organism table.  See `gmod_load_gff3.pl --help` for 
!     details.  The loading script requires GFF3 as it has tighter
!     control of the syntax and requires the use of a controlled vocabulary
!     (SOFA), allowing mapping to the relational schema.  GFF3 files can 
!     be generated either from the included gmod_genbank2gff3.pl script:
  
          $ gmod_genbank2gff3.pl <genbank file> > <gff file>
--- 197,211 ----
      Loads GFF file.  Note that this command will fail unless you add 
      fruitfly to the organism table.  See `gmod_load_gff3.pl --help` for 
!     details.  In summary, execute this command in the psql shell for the
!     database:
! 
!       chado=# insert into organism (abbreviation, genus, species, common_name)
!       chado-# values ('D.melanogaster','Drosophila','melanogaster','fruitfly');
! 
!     to add fruitfly to the organism table.  The loading script requires
!     GFF3 as it has tighter control of the syntax and requires the use of a
!     controlled vocabulary (SOFA), allowing mapping to the relational schema. 
!     GFF3 files can be generated either from the included gmod_genbank2gff3.pl
!     script:
  
          $ gmod_genbank2gff3.pl <genbank file> > <gff file>