From: <all...@us...> - 2003-12-24 07:17:38
|
Update of /cvsroot/gmod/schema/chado In directory sc8-pr-cvs1:/tmp/cvs-serv16252 Modified Files: README.H_sapiens Log Message: typo Index: README.H_sapiens =================================================================== RCS file: /cvsroot/gmod/schema/chado/README.H_sapiens,v retrieving revision 1.4 retrieving revision 1.5 diff -C2 -d -r1.4 -r1.5 *** README.H_sapiens 23 Dec 2003 22:19:06 -0000 1.4 --- README.H_sapiens 24 Dec 2003 07:17:35 -0000 1.5 *************** *** 31,40 **** the chromosomes given in UCSC Build 16 (hg16) of the Human genome. ! wget http://sumo.genetics.ucla.edu/~allenday/chado/Hg16.chromosomes.gff Load the GFF file as below. Make sure you are in your chado distribution directory. ! ./load/bin/load_gff3.pl --organism Human --srcdb 'DB:ucsc' --gfffile Hg16.chromosomes.gff If you look at the data loaded into the feature table at this point, --- 31,40 ---- the chromosomes given in UCSC Build 16 (hg16) of the Human genome. ! wget http://sumo.genetics.ucla.edu/~allenday/chado/Hg16.chromosome.gff Load the GFF file as below. Make sure you are in your chado distribution directory. ! ./load/bin/load_gff3.pl --organism Human --srcdb 'DB:ucsc' --gfffile Hg16.chromosome.gff If you look at the data loaded into the feature table at this point, |