Re: [GMOD-devel] Changing the source field in process_ncbi_human.pl

[Marco V. <mav...@ma...>]

Hi Gudmundur,
The external file idea, you will use it? Because I already have a code 
for that matter, but still need to be merged with yours. But if you code 
a external file configuration, I'll not bother to continue my.

Marco.


Gudmundur Arni Thorisson wrote:

> Will do.
>
>          Mummi
> On Monday, July 15, 2002, at 08:58 , Lincoln Stein wrote:
>
>> Hi Mummi,
>>
>> When you are ready with the revised script, send it to Marco as well 
>> as me, so
>> that he doesn't have to wait for the next release.
>>
>> Lincoln
>>
>> On Friday 12 July 2002 04:40 pm, Gudmundur Arni Thorisson wrote:
>>
>>> I have actually been changing the script quite a bit since I gave it to
>>> Lincoln recently. Among the  changes is to lookup in hashstructure the
>>> proper source value for the feature type, like locus => 'LocusLink',
>>> snp=>'dbSNP' and so on, rather than hardcoding it to NCBI.
>>>
>>> PS I had it like this when I first wrote it, but abandoned it in 
>>> favor of
>>> the value of NCBI for ALL entries, so the hash to use is still there 
>>> above
>>> the main loop. You can easily change that line where $source='NCBI' is
>>> hardcoded into $source = $DBs{$type} || die "DARN: need source/DB 
>>> for type
>>> $type"; or something similar,which is how I do it now. I am planning on
>>> giving Lincoln an updated version in a few days, including this 
>>> change of
>>> course.
>>>
>>> PSS having this as a commandline argument would be nice, though, 
>>> what do
>>> people think about that idea?
>>>
>>>       Mummi, CSHL
>>
>>
>> -- 
>> ========================================================================
>> Lincoln D. Stein                           Cold Spring Harbor Laboratory
>> ls...@cs...                              Cold Spring Harbor, NY
>> ========================================================================
>>
>
>

-- 
#Marco Aurélio Valtas Cunha
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