Re: [Gmod-ajax] Browse "loading" issues

[Scott C. <sc...@sc...>]

Hi Brigitte,

I believe there are issues with running jbrowse from file. I'm forwarding it to the mailing list; they'll have a good answer. 

Scott

Sent from my iPhone

> On Jun 15, 2015, at 4:59 PM, Brigitte Theresa Hofmeister <bri...@ug...> wrote:
> 
> Hi,
> 
> I’m trying to use JBrowse to look at ChIP-seq data where I’m most interested in coverage.  I’ve tried using both the SNPs/Coverage alignment type as well as the FeatureType to view my BAM files.  I have both BAM files indexed.  When I open the index.html page, it shows that the tracks I made for my BAM files are there and when I check the box to display them, they seem to be stuck in the “Loading” state.  I’m really not sure what’s going on or what to.  I’m running the most updated J. Browse software on a MacBookPro with OSX 10.10.3.  I’m viewing the html page in Firefox (because Chrome won’t load the hmtl if I don’t open it via command line with additional options).
> I’m including a screen shot, trackList.json, and tracks.conf.
> 
> Thank you for your help!
> 
> Brigitte Hofmeister
> University of Georgia
> <PastedGraphic-3.png>
> <trackList.json>
> <tracks.conf>
> 
>