[Gmod-ajax] Setup JBrowse question

[Zhiliang Hu <hu...@an...>]

I did a fresh setup of JBrowse, and Volvox test data seems working:
  http://i.animalgenome.org/jbrowse/

As my first test case I try to follow the quick start:
  > setup.sh

then set a reference bovine chromosome 1:

  > bin/flatfile-to-json.pl --gbk /path/to/chr1.gbk \
                            --out data/cattle
                            --key "BTAU.chr1"
                            --tracklabel "BTAU.chr1"

and this quickly created 2 very small files:

  -rw-r--r-- 1 123 456  411 Jul  5 21:09 trackList.json
  -rw-r--r-- 1 123 456    0 Jul  5 21:00 tracks.conf

File "trackList.json":
{
    "tracks" : [
       {
          "style" : {
             "className" : "feature"
          },
          "key" : "BTAU.chr1",
          "storeClass" : "JBrowse/Store/SeqFeature/NCList",
          "trackType" : null,
          "urlTemplate" : "tracks/BTAU.chr1/{refseq}/trackData.json",
          "compress" : 0,
          "type" : "FeatureTrack",
          "label" : "BTAU.chr1"
       }
    ],
    "formatVersion" : 1
}

at this point I am kind of lost as what to follow exactly in order to 
view the track. The online wiki seems to me a big jump for me 
http://gmod.org/wiki/JBrowse_Tutorial  Any step by step procedure or 
sample to folow will be appreciated.

Thanks in advance.

Zhiliang