Re: [Gmod-ajax] Adding track metadata tags at processing time?

[Colin <col...@gm...>]

The --config parameter of flatfile-to-json can take this metadata. Is this
what your were interested in?

bin/flatfile-to-json.pl --gff yourgff.gff3 --config '{ "metadata": { "Track
information": "Gene models", "Data provider":"Data Guru", "Source of
materials": "Libraries (stages 3, 5, 7, and 10)", "Analysis method":
"Mapped the RNA-seq reads with BLAT" } }' --trackLabel OGS

-Colin




On Thu, Jul 3, 2014 at 10:30 AM, Chris Childers <gen...@gm...>
wrote:

> Hi all,
>
> We've been hand editing our track configuration files to add metadata, and
> I would prefer to be able to define track level metadata at the time of
> loading, so that my trackList.json looks more like the example below.  Is
> there a way to invoke flatfile_to_json.pl that will let us add our
> metadata like this?  There are other browsers that have tracks modeled this
> way, and I was just curious if they were handled post processing, or if
> there is a flag I've been missing in the JBrowse configuration guide.
>
> Thanks,
> Chris
>
>       {
>          "style" : {
>               "style_options":  "style goes here"
>             },
>          },
>
>
>
>
>
>
> *         "metadata" : {"Track information": "Gene models", "Data
> provider":"Data Guru", "Source of materials": "Libraries (stages 3, 5, 7,
> and 10)","Analysis method": "Mapped the RNA-seq reads with BLAT"        },*
> "key" : "gene.model",
>          "label" : "Gene Models"
>       }
>
>
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