Re: [Gmod-ajax] setting up jbrowse with a bacterial reference genome

[Heewook L. <he...@um...>]

Thank you so much! just surprised this went undetected till now. :)

-hl

On Wed, Feb 29, 2012 at 3:06 PM, Robert Buels <rb...@gm...> wrote:

> Fixed in master, issue URL: https://github.com/gmod/**jbrowse/issues/73<https://github.com/gmod/jbrowse/issues/73>
>
>
> On 02/28/2012 02:11 PM, Heewook Lee wrote:
>
>> Done!
>>
>> On Tue, Feb 28, 2012 at 1:52 PM, Robert Buels <rb...@gm...
>> <mailto:rb...@gm...>> wrote:
>>
>>    Hi Heewook,
>>
>>    I'll take a look.  Could you add this to the JBrowse issue tracker at
>>    https://github.com/GMOD/__**jbrowse/issues<https://github.com/GMOD/__jbrowse/issues>
>>    <https://github.com/GMOD/**jbrowse/issues<https://github.com/GMOD/jbrowse/issues>
>> >?
>>
>>
>>    Rob
>>
>>
>>    On 02/27/2012 01:17 PM, Heewook Lee wrote:
>>
>>        I have noticed all entries in gff when it's added to jbrowse via
>>        biodb-to-json.pl <http://biodb-to-json.pl>
>>        <http://biodb-to-json.pl/>, start index  always
>>
>>        gets offset by 1. For example, if you have an entry in gff file and
>>        start and end is 1000 2000, when it's added on jbrowse, it will
>>        display
>>        as "start: 999, end: 2000. Why does this happen and are you aware
>> of
>>        this? Thanks!
>>
>>
>>
>