Re: [GMOD-devel] [Gmod-schema] cv for publication type

[Andy S. <an...@mo...>]

And to follow up on Pinglei's response you can download our FlyBase 
controlled vocabulary that is something of a mishmash of CVs that we use 
that don't fit into the other CVs and the publication types are in the 
namespace 'pub_type'

The obo file is available here: 
http://flybase.org/static_pages/downloads/bulkdata7.html
in the 'Ontology Terms' section

FBcv: (controlled vocab)    flybase_controlled_vocabulary.obo.zip

cheers,
Andy
Pinglei Zhou wrote:
> Hi Siddhartha,
> 
> FlyBase have the following types:
>  protein sequence record
>  compendium
>  paper
>  teaching note
>  thesis
>  recording
>  poster
>  erratum
>  species list
>  book
>  film
>  biography
>  letter
>  T-shirt
>  death certificate
>  news article
>  conference report
>  supplementary material
>  interview
>  editorial
>  retraction
>  journal
>  demonstration
>  slides
>  press release
>  FlyBase analysis
>  computer file
>  null type
>  meeting report
>  video
>  stock list
>  other
>  bibliographic list
>  null pub
>  booklet
>  unpublished
>  tactile diagram
>  DNA/RNA sequence record
>  microscope slides
>  note
>  curated genome annotation
>  abstract
>  spoof
>  obituary
>  postage stamp
>  white paper
>  patent
>  autobiography
>  curator
>  review
>  advertisement
>  jigsaw puzzle
>  automatic genome annotation
>  book review
>  poem
>  personal communication to FlyBase
> 
> 
> Pinglei at Harvard FlyBase
> 
> Siddhartha Basu wrote:
>> Hi, 
>> What cv is generally used for storing publiction type in 'type_id' of
>> pub table in chado. What is the standard recommendation for that,  like
>> is there anything out that could be reused or is it generally on ad-hoc
>> basis. 
>>
>> thanks, 
>> -siddhartha
>>
>>
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