[Gmod-apollo-cmts] CVS: apollo/src/java/apollo/config ParameciumNameAdapter.java, 1.12, 1.13

[elee <gk...@us...>]

Update of /cvsroot/gmod/apollo/src/java/apollo/config
In directory sc8-pr-cvs2.sourceforge.net:/tmp/cvs-serv11817

Modified Files:
	ParameciumNameAdapter.java 
Log Message:
+ Made changes to work with current Paramecium data, as requested by the Paramecium group



Index: ParameciumNameAdapter.java
===================================================================
RCS file: /cvsroot/gmod/apollo/src/java/apollo/config/ParameciumNameAdapter.java,v
retrieving revision 1.12
retrieving revision 1.13
diff -C2 -d -r1.12 -r1.13
*** ParameciumNameAdapter.java	11 Oct 2007 10:08:48 -0000	1.12
--- ParameciumNameAdapter.java	3 Apr 2008 00:33:39 -0000	1.13
***************
*** 30,33 ****
--- 30,35 ----
  import apollo.dataadapter.ApolloDataAdapterI;
  
+ import apollo.dataadapter.Region;
+ 
  public class ParameciumNameAdapter  implements ApolloNameAdapterI {
  
***************
*** 521,525 ****
    
    private String parseNumberScaffoldFromCurationName(String curationName) {
!     return curationName.replaceAll("scaffold_","");
    }
    
--- 523,529 ----
    
    private String parseNumberScaffoldFromCurationName(String curationName) {
!     //return curationName.replaceAll("scaffold_","");
!     String chromosome = new Region(curationName).getChromosome();
!     return chromosome.replaceAll("scaffold_", "");
    }