[Gmod-apollo-cmts] CVS: apollo/src/java/apollo/editor Transaction.java,1.43,1.44 UpdateTransaction.java,1.24,1.25

[Mark G. <mg...@us...>]

Update of /cvsroot/gmod/apollo/src/java/apollo/editor
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13539/src/java/apollo/editor

Modified Files:
	Transaction.java UpdateTransaction.java 
Log Message:
fixed bug with jdbc writeback with splits reported by cyril - an exon
gets moved from old splitter transcript to new splitee transcript -
this manifests as a insert & delete exon transaction (compund update
parent transaction) and
TransactionManager in coalescing queries if the deleted exon is from
an added ancestor and it was coming back with true as deleted exon was
now seeing the new added transcript as its parent - the correction is
to use the deleted exons old parent not its new one in coalescing and
the transaction carries this along
but this correction has exposed a new bug - adding of a new transcript
is not checking whether its exons are shared - where adding genes is -
yikes! so adding a new transcript can end up adding a duplicate shared
exon - big chado no-no - gotta love those shared exons



Index: Transaction.java
===================================================================
RCS file: /cvsroot/gmod/apollo/src/java/apollo/editor/Transaction.java,v
retrieving revision 1.43
retrieving revision 1.44
diff -C2 -d -r1.43 -r1.44
*** Transaction.java	20 Sep 2005 15:09:31 -0000	1.43
--- Transaction.java	29 Nov 2005 20:28:27 -0000	1.44
***************
*** 128,132 ****
    }
  
!   boolean isUpdate() { return false; }
  
    public boolean isAdd() { return false; }
--- 128,132 ----
    }
  
!   public boolean isUpdate() { return false; }
  
    public boolean isAdd() { return false; }

Index: UpdateTransaction.java
===================================================================
RCS file: /cvsroot/gmod/apollo/src/java/apollo/editor/UpdateTransaction.java,v
retrieving revision 1.24
retrieving revision 1.25
diff -C2 -d -r1.24 -r1.25
*** UpdateTransaction.java	28 Sep 2005 15:15:53 -0000	1.24
--- UpdateTransaction.java	29 Nov 2005 20:28:27 -0000	1.25
***************
*** 60,64 ****
    }
  
!   boolean isUpdate() { return true; }
  
    /** fiddling about... trying this out */
--- 60,64 ----
    }
  
!   public boolean isUpdate() { return true; }
  
    /** fiddling about... trying this out */