[Gmod-apollo-cmts] CVS: apollo/src/java/apollo/gui FeatureTreePanel.java,1.65,1.66

[Mark G. <mg...@us...>]

Update of /cvsroot/gmod/apollo/src/java/apollo/gui
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv3507/src/java/apollo/gui

Modified Files:
	FeatureTreePanel.java 
Log Message:
so peptide ids(accs) & names(formerly displayId) were being
erroneoulsly lumped on name changes. now settting of transcript name
ONLY changes the peptide name, peptide acc/id is left untouched. split
out a new PEPTIDE_ID subpart. next i need to add changing peptide id
on id changes. 

renamed SequenceI. displayId to name - if this is contentious its
trivial to switch it back - but i found displayId confusing - its
really a name i think (and once peptides become features thats what it
will be). 



Index: FeatureTreePanel.java
===================================================================
RCS file: /cvsroot/gmod/apollo/src/java/apollo/gui/FeatureTreePanel.java,v
retrieving revision 1.65
retrieving revision 1.66
diff -C2 -d -r1.65 -r1.66
*** FeatureTreePanel.java	13 Sep 2004 23:26:01 -0000	1.65
--- FeatureTreePanel.java	28 Apr 2005 18:43:47 -0000	1.66
***************
*** 299,303 ****
        if (seq != null) {
          label = sf.getType() +
!           (seq.getDisplayId() != null ? ": " + seq.getDisplayId() : "");
        } else {
          label = sf.getType() + 
--- 299,303 ----
        if (seq != null) {
          label = sf.getType() +
!           (seq.getName() != null ? ": " + seq.getName() : "");
        } else {
          label = sf.getType() +