[Gmod-apollo-cmts] CVS: apollo/doc/html userguide.html,1.215,1.216

[Nomi H. <no...@us...>]

Update of /cvsroot/gmod/apollo/doc/html
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2004/html

Modified Files:
	userguide.html 
Log Message:

updated command-line option description


Index: userguide.html
===================================================================
RCS file: /cvsroot/gmod/apollo/doc/html/userguide.html,v
retrieving revision 1.215
retrieving revision 1.216
diff -C2 -d -r1.215 -r1.216
*** userguide.html	29 Mar 2005 00:46:30 -0000	1.215
--- userguide.html	7 Apr 2005 22:03:52 -0000	1.216
***************
*** 609,613 ****
  to get a list of the options.  Valid arguments are:
  <pre>
!   -i, --inputFormat=input format        Specify input format. 
                                          [chadoDB|game|chadoxml|genbank|gff|backup]
    -f, --inputFile=filename              Specify filename to read in 
--- 609,613 ----
  to get a list of the options.  Valid arguments are:
  <pre>
!   -i, --inputFormat=input_format        Specify input format. 
                                          [chadoDB|game|chadoxml|genbank|gff|backup]
    -f, --inputFile=filename              Specify filename to read in 
***************
*** 615,624 ****
    -l, --location=location               Specify a location for input. 
                                          Chromosome:start-end, e.g. chr1:1000-6000
!   -x, --readGameFile=read game file     Read in a game file. (Shorthand for -i game 
                                          -f gamefile)
!   -b, --readBackupFile=read backup file Read in a backup (serialized) file. 
                                          (Shorthand for -i serialized -f serFile)
!   -s, --sequenceFile=read sequence file Specify FASTA sequence file to load with
                                          gff file
    -?, --help                            Show this help message
  </pre>
--- 615,627 ----
    -l, --location=location               Specify a location for input. 
                                          Chromosome:start-end, e.g. chr1:1000-6000
!   -x, --readGameFile=game_file          Read in a game file. (Shorthand for -i game 
                                          -f gamefile)
!   -b, --readBackupFile=backup_file      Read in a backup (serialized) file. 
                                          (Shorthand for -i serialized -f serFile)
!   -s, --sequenceFile=sequence_file      Specify FASTA sequence file to load with
                                          gff file
+   -o, --outputFormat=output_format      Specify output format. 
+                                         [chadoDB|game|chadoxml|genbank|gff|backup]
+   -w, --writeFile=filename              Filename to write to
    -?, --help                            Show this help message
  </pre>
***************
*** 3327,3331 ****
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! Last modified: Mon Mar 28 14:58:04 PST 2005
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--- 3330,3334 ----
  <HR><P>
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! Last modified: Thu Apr  7 11:12:03 PDT 2005
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