[Gmod-apollo-cmts] CVS: apollo/src/java/apollo/dataadapter/gamexml GAMEAdapter.java,1.97,1.98

[Guanming Wu <gua...@us...>]

Update of /cvsroot/gmod/apollo/src/java/apollo/dataadapter/gamexml
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv18621/apollo/src/java/apollo/dataadapter/gamexml

Modified Files:
	GAMEAdapter.java 
Log Message:
To control chado transaction xml output

Index: GAMEAdapter.java
===================================================================
RCS file: /cvsroot/gmod/apollo/src/java/apollo/dataadapter/gamexml/GAMEAdapter.java,v
retrieving revision 1.97
retrieving revision 1.98
diff -C2 -d -r1.97 -r1.98
*** GAMEAdapter.java	11 Nov 2004 00:35:38 -0000	1.97
--- GAMEAdapter.java	18 Nov 2004 03:53:22 -0000	1.98
***************
*** 320,336 ****
        // Save transactions to a GAME transaction format
        saveTransactionsInGAME(curation, fileName);
!       // Save transactions to chado transaction format
!       TransactionOutputAdapter output = new ChadoTransactionXMLWriter();
!       if (isChromosomeArmUsed(curation)) {
!         output.setMapID(curation.getChromosome());
!         output.setMapType("chromosome_arm");
!       }
!       else {
!         output.setMapID(curation.getChromosome());
!         output.setMapType("chromosome");
        }
-       output.setTransformer(new ChadoTransactionTransformer());
-       output.setTarget(fileName);
-       output.commit(curation.getTransactionManager().getTransactions());
      }
      catch(Exception e) {
--- 320,338 ----
        // Save transactions to a GAME transaction format
        saveTransactionsInGAME(curation, fileName);
!       if (Config.isChadoTnOutputNeeded()) {
!         // Save transactions to chado transaction format
!         TransactionOutputAdapter output = new ChadoTransactionXMLWriter();
!         if (isChromosomeArmUsed(curation)) {
!           output.setMapID(curation.getChromosome());
!           output.setMapType("chromosome_arm");
!         }
!         else {
!           output.setMapID(curation.getChromosome());
!           output.setMapType("chromosome");
!         }
!         output.setTransformer(new ChadoTransactionTransformer());
!         output.setTarget(fileName);
!         output.commit(curation.getTransactionManager().getTransactions());
        }
      }
      catch(Exception e) {