[Gmod-apollo-cmts] CVS: apollo/src/java/apollo/dataadapter/gamexml GAMEAdapter.java,1.80,1.81

[Mark G. <mg...@us...>]

Update of /cvsroot/gmod/apollo/src/java/apollo/dataadapter/gamexml
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv6453/src/java/apollo/dataadapter/gamexml

Modified Files:
	GAMEAdapter.java 
Log Message:
Retrieving featprops for transcripts - this fills in some of the annot
info. still need to do for genes. also need to get annotinfo from
other tables - synonyms, dbxref. Also cant find where internal flag
and date is for comments. 

added get/setOwner to AnnotatedFeatureI, so dont have to instanceof
and cast to Transcript for it.



Index: GAMEAdapter.java
===================================================================
RCS file: /cvsroot/gmod/apollo/src/java/apollo/dataadapter/gamexml/GAMEAdapter.java,v
retrieving revision 1.80
retrieving revision 1.81
diff -C2 -d -r1.80 -r1.81
*** GAMEAdapter.java	1 Jul 2004 22:37:54 -0000	1.80
--- GAMEAdapter.java	12 Jul 2004 23:09:02 -0000	1.81
***************
*** 2078,2081 ****
--- 2078,2083 ----
    }
  
+   /** Deals with a handful of tag-value pairs: total_score/score, amino-acid, 
+       non-canonical_splice_site, cigar, symbol, and problem */
    private boolean setTagValue (SeqFeatureI sf,
  			       XMLElement output_element,