From: Michele M. <mat...@eb...> - 2009-12-08 11:02:33
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Yep, the failure is from the svn code: mattions@triton:ecell-3.1(master)$ git svn info Path: . URL: http://ecell.svn.sourceforge.net/svnroot/ecell/ecell3/branches/ecell-3.1 Repository Root: http://ecell.svn.sourceforge.net/svnroot/ecell Repository UUID: f1531174-cb10-0410-9fe6-89aa7ac3eedb Revision: 3464 Node Kind: directory Schedule: normal Last Changed Author: moriyoshi Last Changed Rev: 3464 Last Changed Date: 2009-04-29 15:27:07 +0100 (Wed, 29 Apr 2009) (Using git bridge to svn...) On Tue, Dec 8, 2009 at 10:57 AM, Moriyoshi Koizumi <mo...@sf...>wrote: > Hi, > > This should have been fixed at some point. Did you get this when you > were trying to use the svn version instead of 3.1.107? > > -- moriyoshi > > > > On Tue, Dec 8, 2009 at 7:50 PM, Michele Mattioni <mat...@eb...> > wrote: > > Hi Moriyoshi, > > > > I've managed to compile the version (1.107), commenting the Gillespie.hpp > > > > When I try to compile the code from the svn I hit a libtool problem which > I > > don't really understand. > > > > I use the .autogen/sh > > ./configure > > make > > > > process > > > > mattions@triton:ecell-3.1(master)$ make > > make all-recursive > > make[1]: Entering directory > > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1' > > Making all in libltdl > > make[2]: Entering directory > > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1/libltdl' > > make all-am > > make[3]: Entering directory > > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1/libltdl' > > /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H > > -I. -g -O2 -c -o ltdl.lo ltdl.c > > ./libtool: line 463: CDPATH: command not found > > ./libtool: line 1141: func_opt_split: command not found > > libtool: Version mismatch error. This is libtool 2.2.6 > Debian-2.2.6a-4, > > but the > > libtool: definition of this LT_INIT comes from an older release. > > libtool: You should recreate aclocal.m4 with macros from libtool > 2.2.6 > > Debian-2.2.6a-4 > > libtool: and run autoconf again. > > make[3]: *** [ltdl.lo] Error 63 > > make[3]: Leaving directory > > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1/libltdl' > > make[2]: *** [all] Error 2 > > make[2]: Leaving directory > > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1/libltdl' > > make[1]: *** [all-recursive] Error 1 > > make[1]: Leaving directory > > `/home/mattions/Work/progs/ecell/ecell3/branches/ecell-3.1' > > make: *** [all] Error 2 > > > > BTW, > > thanks for Ecell. It's awesome. > > > > On Mon, Dec 7, 2009 at 10:29 AM, Moriyoshi Koizumi <mo...@sf...> > > wrote: > >> > >> Hi, > >> > >> This is due to an *inappropriate* change in the recent glibc that > >> defines "getc" as a preprocessor macro in place of a weak alias to the > >> actual function name. You can checkout the latest source code from > >> the ecell's subversion repository which already includes workaround > >> for this problem (plus several crucial fixes). > >> > >> > http://ecell.svn.sourceforge.net/svnroot/ecell/ecell3/branches/ecell-3.1 > >> > >> -- moriyoshi > >> > >> > >> > >> On Mon, Dec 7, 2009 at 6:50 PM, Michele Mattioni <mat...@eb...> > >> wrote: > >> > Hello ecell-3 devs, > >> > > >> > I'm trying to compile the final version of Ecell-3 (1.107) on a > Ubuntu > >> > Karmic (9.10) and unfortunaly the compilation fail: > >> > > >> > cc -fPIC -g -O2 -g -O2 -Wno-pmf-conversions -g -O2 > >> > -Wno-pmf-conversions > >> > -D_ECELL3_DM_CLASSNAME= > >> > GillespieProcess -I/usr/include -I../libecs -I../.. -I.. > -I../../libltdl > >> > -I/usr/include/python2.6 -c GillespieProcess.cpp -o GillespieProcess.o > >> > In file included from GillespieProcess.cpp:28: > >> > GillespieProcess.hpp: In static member function ‘static void > >> > GillespieProcess::initializePropertyInterface(libecs::Type2Type<TT>)’: > >> > GillespieProcess.hpp:59: error: ‘getc’ is not a member of > >> > ‘GillespieProcess’ > >> > GillespieProcess.hpp:59: error: ‘getc’ is not a member of > >> > ‘GillespieProcess’ > >> > dmcompile: failed to compile the specified source files: > >> > CompileError(DistutilsExecError("command 'cc' failed with exit status > >> > 1",),) > >> > ecell3-dmc: ../../dmtool/dmcompile returned error status: 1 > >> > make[4]: *** [GillespieProcess.so] Error 1 > >> > make[4]: Leaving directory > >> > `/home/mattions/Work/progs/ecell/ecell-3.1.107/ecell/dm' > >> > make[3]: *** [all-recursive] Error 1 > >> > make[3]: Leaving directory > >> > `/home/mattions/Work/progs/ecell/ecell-3.1.107/ecell' > >> > make[2]: *** [all] Error 2 > >> > make[2]: Leaving directory > >> > `/home/mattions/Work/progs/ecell/ecell-3.1.107/ecell' > >> > make[1]: *** [all-recursive] Error 1 > >> > make[1]: Leaving directory > >> > `/home/mattions/Work/progs/ecell/ecell-3.1.107' > >> > make: *** [all] Error 2 > >> > > >> > The problem seems to be the line 59 of the > ecell/dm/GillespieProcess.hpp > >> > file, which is: > >> > > >> > PROPERTYSLOT_GET_NO_LOAD_SAVE( Real, c ); > >> > > >> > Any suggestions? > >> > > >> > (Are you thinking to provide deb package for karmic? (maybe using > >> > launchpad... :) ) > >> > > >> > Regards, > >> > Michele Mattioni > >> > > >> > > >> > > ------------------------------------------------------------------------------ > >> > Join us December 9, 2009 for the Red Hat Virtual Experience, > >> > a free event focused on virtualization and cloud computing. > >> > Attend in-depth sessions from your desk. Your couch. Anywhere. > >> > http://p.sf.net/sfu/redhat-sfdev2dev > >> > _______________________________________________ > >> > Ecell-devel mailing list > >> > Ece...@li... > >> > https://lists.sourceforge.net/lists/listinfo/ecell-devel > >> > > >> > > > > > > |