[Bowtie-bio-announce] Bowtie 0.12.6 released

[Langmead, B. <bla...@jh...>]

Version 0.12.6 - August 29, 2010
   * Modified bowtie-inspect's default mode to use the bit-encoded
     reference portion of the index to reconstruct the reference
     sequence, rather than the ebwt portion.  This makes bowtie-inspect
     much faster and uses less memory, and the output for a colorspace
     index will now be in nucleotide space.  To get the behavior of the
     old default, use the new -e/--ebwt-ref option.
   * Fixed bug whereby SOLiD QV strings would fail to parse.
   * Moved to a new default way of building the reverse index.  Revert
     to the old behavior with bowtie-build's new --old-reverse option.
     The new reverse index format is forward and backward compatible
     with `bowtie`, unless otherwise noted in a future version.
   * Fixed issue that would sometimes cause bowtie-build to crash when
     building a large index with a low --offrate.
   * Fixed build issue that would cause bowtie-build built on one
     version of Linux to die with a "floating point error" on other
     versions.
   * Fixed a bug whereby alignment cost could sometimes be
     miscalculated.  Stratum was unaffected.
   * bowtie now simply skips reads with 0 characters.  Previously it
     would print an error and exit.

Thanks,
Ben