Feature Requests Maximize Restore

Showing results of 36

# Summary Milestone Status Owner Created Updated Priority
103 add Fink and Homebrew to distributions list Next Release open 2014-03-11 2014-03-11 5  
102 Ability to modify -a behavior keeping only best alignments Next Release open 2013-11-19 2013-11-19 5  
97 Replace std::map by std::unordered_map None open Ben Langmead 2013-03-30 2013-03-30 5  
96 Bowtie2 -- make summary output less confusing None open Ben Langmead 2013-02-13 2013-02-13 5  
93 Slight modification to incorporate methylation data None open Ben Langmead 2012-11-19 2012-11-19 5  
92 Raise error on multiple -x flags None open Ben Langmead 2012-11-08 2012-11-08 5  
91 Alignment position on reads None open Ben Langmead 2012-10-15 2012-10-15 5  
90 bowtie2 QUAL fields in -k or -a mode None open Ben Langmead 2012-10-12 2012-10-12 5  
88 Support for comma-separated filenames None open Ben Langmead 2012-09-28 2012-09-28 5  
87 ability to set initial seed placement None open Ben Langmead 2012-09-11 2012-09-11 5  
85 bowtie2(beta7) distinguish single and multiple best hits None open Ben Langmead 2012-08-01 2012-08-01 5  
83 unmatched None open Ben Langmead 2012-07-28 2012-07-28 5  
82 Selectively Mask bases within the fragment of only one of t Next Release open Ben Langmead 2012-07-27 2012-07-27 5  
81 Hi-C alignment None open Ben Langmead 2012-07-23 2012-07-23 5  
80 Read qualities in sam None open Ben Langmead 2012-07-13 2012-07-13 5  
79 File Descriptor Input from Command Line None open Ben Langmead 2012-07-12 2012-07-12 5  
78 bowtie2 - automatically detect FASTQ vs FASTA Next Release open Ben Langmead 2012-06-09 2012-06-09 5  
77 bowte2: maxmapped fastq output desired None open Ben Langmead 2012-05-16 2012-05-16 5  
76 bowtie2: NH and IH tags desired None open Ben Langmead 2012-05-16 2012-05-16 5  
72 include -mapq option None open Ben Langmead 2012-03-09 2012-03-09 5  
71 include -mapq option None open Ben Langmead 2012-03-08 2012-03-08 5  
70 make isize 0 when reads map to different ref sequences. None open Ben Langmead 2012-02-23 2012-02-23 5  
64 -m with Bowtie 2 None open Ben Langmead 2011-11-01 2011-11-01 5  
63 please support unaligned bam format None open Ben Langmead 2011-10-20 2011-10-20 5  
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