Bowtie / Bugs / #277 Many Unique matches in some regions missed when -m 1 used

#277 Many Unique matches in some regions missed when -m 1 used

Milestone: v0.9.0

Status: closed-duplicate

Owner: nobody

Labels: bowtie (178)

Priority: 1

Updated: 2013-02-18

Created: 2013-02-18

Creator: Nigel Dyer

Private: No

Version: 0.12.8 64 bit precompiled for Linux
In genomic regions with particular characteristics (which just happen to be the ones I am interested in) up to 2/3 of the unique matches are missed when using the -m 1 option. These matches are found if the '-m 1' option is not used and the resulting output is post processed to remove non-unique matches. Many of the missed matches are perfect matches with no misalignments.

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Nigel Dyer - 2013-02-18

6_sequence_chr14_94055611_94056500_raw.txt

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Nigel Dyer - 2013-02-18

priority: 5 --> 1

status: open --> closed-duplicate
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Nigel Dyer - 2013-02-18

Incorrectly posted. Will try again

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Many Unique matches in some regions missed when -m 1 used

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#277 Many Unique matches in some regions missed when -m 1 used

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