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334 bowtie-inspect crashes v0.9.0 closed 2015-04-22 2015-04-29 5  
333 Error, cmd: bowtie2-build!! Abundance Estimation Using RSEM (Trinity) Paired end reads! v0.9.0 closed Val 2015-04-16 2015-05-07 5  
331 bowtie 1.1.1 fails on large index v0.9.0 closed Val 2015-03-31 2015-05-07 3  
327 bowtie2-align died with signal 6 (ABRT) v0.9.0 closed 2015-01-09 2015-02-17 5  
325 bowtie2 Perl wrapper does not quote argument values v0.9.0 closed Val 2014-12-09 2015-02-17 5  
324 Typos in doc v0.9.0 closed Val 2014-12-05 2015-02-17 5  
321 bowtie2 --no-unal option removed from help/usage statement v0.9.0 closed Val 2014-09-29 2014-09-29 5  
316 (ERR): Expected bowtie2 to be in same directory with bowtie2-align v0.9.0 closed Val 2014-06-12 2014-10-01 5  
315 error in bowtie2 v0.9.0 closed 2014-06-10 2015-02-11 5  
314 bowtie2-inspect crash v0.9.0 closed 2014-05-19 2014-06-11 5  
313 BOWTIE2 => (ERR): Could not open --un-conc mate-1 output file ... at line 402 v0.9.0 closed 2014-05-19 2014-06-11 5  
312 bowtie 1.0.1 on mac os x 10.9.2 could not be compiled v0.9.0 closed Val 2014-05-16 2014-07-23 5  
311 Results on reverse complement reads v0.9.0 closed 2014-05-14 2014-06-18 7  
310 Incorrect fastq format of --un output v0.9.0 closed Val 2014-05-12 2014-12-01 5  
309 bowtie2-align died with signal 8 (FPE) (core dumped) v0.9.0 closed Val 2014-04-28 2014-08-20 5  
305 bowtie2-align died with signal 6 (ABRT) v0.9.0 closed 2014-03-26 2015-01-19 4  
302 Bowtie2 alignment speed very slow for many Ns in the reference sequence v0.9.0 closed 2014-02-26 2014-04-08 5  
301 Can't run new bowtie2.2 v0.9.0 closed Val 2014-02-19 2014-02-20 5  
300 Bowtie2 error: Getopt::Long module v0.9.0 closed Val 2014-02-17 2014-02-17 5  
297 Bowtie2 2.1.0 win32 bowtie2-align.exe crashes in Windows XP v0.9.0 closed Val 2013-12-19 2014-06-11 5  
296 bowtie2-2.1.0 not always respecting -N 0 v0.9.0 closed Val 2013-12-06 2014-02-28 5  
295 tophat2 - Encountered internal Bowtie 2 exception (#1) v0.9.0 closed Val 2013-12-05 2015-02-26 5  
293 call_genotype.cc line 107 v0.9.0 closed 2013-11-28 2013-12-04 5  
292 bowtie2 only map reverse-complement reference strand v0.9.0 closed 2013-10-16 2014-08-22 5  
291 Changing the order of the paired read files changes the output v0.9.0 closed 2013-09-09 2013-09-27 5  
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