From: Susan J. M. <sjm...@em...> - 2006-11-01 17:03:47
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I have just installed AMOS under Cygwin on my Windows XP system and when I try to run trachive2amos on a Generic Multi-FASTA file, I get this uninformative error message: $ bin/tarchive2amos -o roane /cygdrive/z/Roane/Allctgs Died at /cygdrive/u/src/AMOS/amos-1.4.5/lib/AMOS/AmosFoundation.pm line 272. My input file looks like this: $ head /cygdrive/z/Roane/Allctgs >454AllContigs_Contig1 GCACCTGCACTACACCGCACTGCCGGACTGGGCCAGTCGCTGGGCATGGC GATGTCGATATCCTGCTGGCACCAAGCTGGGGCGGCATGATCAACGGCAT GATGACCCTCTCGGGCGCCTGGCATAAGTTGCGCAGCGACCCGATCCTGC GCTTCCTCGTGGTCTCGCTGGCGTTTTACGGCATGTCGACCTTCGAAGGT CCGATGATGGCGATCAAGACCGTCAACGCCCTCTCCCACTACACCGACTG GACCATCGGCCACGTTCACGCCGGCGCGCTCGGCTGGGTGGCGATGATTT CCATCGGCGCGCTGTACCACATGATCCCGAAAGTCTTCGGCAAAGAGCAG ATGCACAGCATCGGCCTGATCAACGCGCACTTCTGGCTCGCCACCATCGG CACCGTGCTCTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCC ... Can anyone suggest what the problem might be? -- Thanks, -susan Susan J. Miller Biotechnology Computing Facility Arizona Research Laboratories Bio West 228 University of Arizona Tucson, AZ 85721 (520) 626-2597 |