From: Dan B. <dan...@gm...> - 2010-12-16 14:25:29
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This should be possible by turning your files into a format recognised by Bambus. Sorry, did you get a reply already? If not, can you explain the format of your mate pair information, and then we can work out how to convert it into a GFD-like .contig file for input to Bambus. On 25 February 2010 12:21, Marten Boetzer <mbo...@ho...> wrote: > Hello, > > i have a problem. We used a program that can build contigs, but can't build > scaffolds. Therefore, we are searching for a stand-alone program for > scaffolding. We came to Bambus, but we didn't find our problem in the > manual. Any additional files, besides the .fasta file of the contigs, we > don't have. > > Is it possible to put in a .fasta file containing the contigs and then > scaffold these contigs using 2 mate-pair files? > > Kind regards, > > Marten Boetzer > > > ________________________________ > Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. Sign up now. > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > AMOS-help mailing list > AMO...@li... > https://lists.sourceforge.net/lists/listinfo/amos-help > > |