Re: [AMOS-help] Clear Consensus

[Adam P. <aph...@gm...>]

Hi Ryan,
How did you remove the reads from the contigs? If you removed them from the
bank "layout" structure, you can rerun make-consensus.

Best,
-Adam


On Thu, Dec 3, 2009 at 8:56 PM, Ryan Tewhey <rt...@sc...> wrote:

> Hi Everyone,
>        This is probably very easy to do but being new to AMOS I cannot seem
> to figure out how to do the following...
>         I have contigs built using "reads" and I have gone ahead and
> removed some of the reads but cannot figure out how to get the consensus
> sequence to update. Specifically I have removed a few reads from the ends of
> the contigs and want to trim back the consensus to the start of the next
> remaining read. Essentially I want the trimContig -c option but for 0x
> instead of 1x.
>        Any help would be really appreciated.
>
> Best,
> Ryan
>
>
>
>
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