jd690764

Update - I re-ran the process using philosopher v4.2.1 - no problem this time. Thanks, Janos

Hi, I am processing a phosphoproteomic dataset produced on a timsTOF pro machine using fragPipe. PTMprophet finished running without any errors, but for a subset of the samples it produced only a pep.xml.tmp file (no mod.pep.xml) and these files are all apparently truncated (they end with a '' tag). I attached the log file from the run. Please let me know if you need any more details. Thank you, Janos

Thank you! Janos On Mon, Oct 6, 2014 at 2:47 AM, Paola Roncaglia <paolaroncaglia@users.sf.net...

Hi Steve, Thank you for your help - it's much appreciated. I have one more question...

HI Karen, Can you send me the SO_id for this term? Thanks, Janos On Fri, Jul 11,...

Hi Steve, thank you for processing these entries. I just noticed that you did not...

HI Paola, I am no expert on this field, so I am not sure. In a quick google search...

Hi Paola, Thank you. It seems reasonable. Janos On Wed, Feb 19, 2014 at 5:48 AM,...