haruna

Hello there! I have been trying to run a large wheat input on a large cluster system, and I have gotten as far as running it to completion using ~1000 cores, but with ~3000 cores it appears to be stuck trying to get through merAligner-51. It looks like there is probably some contention for some shared resources, but I was wondering if you might have any insights or suggestions as to what might be going on and what I might try next. I built UPC/GASnet with --disable-shmem --with-sptr-packed-bits=20,12,32,...

It looks like the timing difference occurs in the part of the code with the attached...

Thank you, Bastien, for your reply! Yes, MIRA was the only process running. I am...

Variable run time?