Hello, I am interested to know/understand how the Bowtie/Bowtie2 indexes are built...
It looks like this error appears if there is a dot in the path name given to "--...
BOWTIE2 => (ERR): Could not open --un-conc mate-1 output file ... at line 402
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After installing Perl module Getopt::Long I get this error: /tools/bowtie2/bowtie2-align-s:...
This error does not appear with Bowtie2 v2.1.0!
Bowtie2 error: Getopt::Long module