NAMD

NAMD

Theoretical and Computational Biophysics Group
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About

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, it scales from desktop and laptop computers to high-end parallel platforms, hundreds of cores for typical simulations, and beyond 500,000 cores for the largest simulations. NAMD is built for researchers who need to simulate large molecular systems efficiently while preserving compatibility with widely used molecular modeling workflows. It uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, and it is file-compatible with AMBER, CHARMM, and X-PLOR. It is designed to support biomolecular simulations involving proteins, membranes, nucleic acids, solvents, ions, and other molecular systems where atomic interactions and time-dependent motion need to be studied in detail.

About

Tellurium is a Python package that knits together a variety of important packages for carrying out simulation studies in systems biology and other disciplines. Tellurium provides an interface to the powerful high-performance lib roadrunner simulation engine. Tellurium allows you to build your models using an easy-to-use human-readable version of SBML called Antimony. Antimony Tutorial. Tellurium supports all the major standards such as SBML, SED-ML, and COMBINE archives. Tellurium can be used via GUI front-ends such as Spyder, PyCharm, or Jupyter Notebooks (including CoLab) with support for advanced productivity and interactive editing features. Installation is via standard pip installation. We also provide a one-click installer for Windows users which provides a complete environment for systems biology modeling. Tellurium relies on open-source contributions from many people.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Biophysicists, structural biologists, and molecular simulation researchers requiring a biomolecular simulation tool for desktops, clusters, GPUs, and supercomputers

Audience

Companies searching for a solution for carrying out simulation studies in system

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

Pricing

Free
Free Version
Free Trial

Pricing

$15.00/month/user
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

Theoretical and Computational Biophysics Group
Founded: 2006
United States
www.ks.uiuc.edu/Research//namd/

Company Information

Tellurium
Founded: 2010
United States
tellurium.analogmachine.org

Alternatives

Alternatives

PyCharm

PyCharm

JetBrains
Gurobi Optimizer

Gurobi Optimizer

Gurobi Optimization
Ascalaph Designer

Ascalaph Designer

Agile Molecule
JupyterLab

JupyterLab

Jupyter
ESMC

ESMC

Biohub

Categories

Categories

Automated Testing Features

Hierarchical View
Move & Copy
Parameterized Testing
Requirements-Based Testing
Security Testing
Supports Parallel Execution
Test Script Reviews
Unicode Compliance

Integrations

No info available.

Integrations

No info available.
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