Loupe Browser

Loupe Browser

10x Genomics
Thoa

Thoa

Thoa.io
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+

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About

Loupe Browser is a powerful visualization software that provides the intuitive functionality you need to explore and analyze your 10x Genomics Chromium and Visium data. You can also convert your Seurat objects into Loupe Browser files using the LoupeR package. The navigation and interactive functionality of the Loupe Browser interface uses a lung squamous cell carcinoma dataset. The workspace is centered around the view panel in which single points representing cell barcodes are shown in a variety of projections. Each point represents a single barcode, the vast majority of which correspond to a single cell. The default projection is the t-SNE plot created by the cell ranger pipeline, though other projections are available. You can drag the mouse over the cells to reposition the plot and use the mouse wheel or trackpad to zoom in and out. Cluster labels appear as you move your mouse over the plot, which is useful for data that has a high number of precomputed clusters.

About

Thoa is a cloud bioinformatics platform that solves the six most expensive problems researchers face daily: environment and dependency conflicts, pipeline management, reproducibility, scaling compute, collaboration, and data sharing. Run Nextflow and Snakemake workflows on managed cloud infrastructure (up to 12TB RAM) with zero DevOps setup. Thoa's AI-assisted debugger resolves environment issues in real time, so pipelines don't crash hours into execution. Every run automatically captures its full execution context: data, software versions, environment, and machine config. Share complete analyses with collaborators in one click. Recipients can view and re-run results without creating an account or mirroring infrastructure. Supports Docker, Conda, Singularity, Python, and R.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Labs interested in a solution to manage, analyze, and visualize their research data

Audience

Bioinformaticians, computational biologists, genomics researchers, core facility managers, lab directors, biotech R&D teams, pharma research groups, CROs, academic research labs, bioinformatics MSc programs

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

No images available

Pricing

No information available.
Free Version
Free Trial

Pricing

$35/user/month
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

10x Genomics
Founded: 2012
United States
www.10xgenomics.com/support/software/loupe-browser/latest

Company Information

Thoa.io
Founded: 2026
Switzerland
www.thoa.io

Alternatives

OmnibusX

OmnibusX

OmnibusX Company Limited

Alternatives

Parse Biosciences Evercode

Parse Biosciences Evercode

Parse Biosciences
Nextflow

Nextflow

Seqera Labs
Elucidata Polly

Elucidata Polly

Elucidata

Categories

Categories

Integrations

No info available.

Integrations

No info available.
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