Loupe Browser10x Genomics
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Related Products
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About
Loupe Browser is a powerful visualization software that provides the intuitive functionality you need to explore and analyze your 10x Genomics Chromium and Visium data. You can also convert your Seurat objects into Loupe Browser files using the LoupeR package. The navigation and interactive functionality of the Loupe Browser interface uses a lung squamous cell carcinoma dataset. The workspace is centered around the view panel in which single points representing cell barcodes are shown in a variety of projections. Each point represents a single barcode, the vast majority of which correspond to a single cell. The default projection is the t-SNE plot created by the cell ranger pipeline, though other projections are available. You can drag the mouse over the cells to reposition the plot and use the mouse wheel or trackpad to zoom in and out. Cluster labels appear as you move your mouse over the plot, which is useful for data that has a high number of precomputed clusters.
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About
PyQtGraph is a pure-python graphics and GUI library built on PyQt/PySide and NumPy. It is intended for use in mathematics/scientific/engineering applications. Despite being written entirely in python, the library is very fast due to its heavy leverage of NumPy for number crunching and Qt's GraphicsView framework for fast display. PyQtGraph is distributed under the MIT open-source license. Basic 2D plotting in interactive view boxes. Line and scatter plots. Data can be panned/scaled by mouse. Fast drawing for real-time data display and interaction. Displays most data types (int or float; any bit depth; RGB, RGBA, or luminance). Functions for slicing multidimensional images at arbitrary angles (great for MRI data). Rapid update for video display or real-time interaction. Image display with interactive lookup tables and level control. Mesh rendering with isosurface generation. Interactive viewports rotate/zoom with mouse. Basic 3D scenegraph for easier programming.
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Platforms Supported
Windows
Supported
Mac
Supported
Linux
Supported
Cloud
Not Supported
On-Premises
Not Supported
iPhone
Not Supported
iPad
Not Supported
Android
Not Supported
Chromebook
Not Supported
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Platforms Supported
Windows
Supported
Mac
Supported
Linux
Supported
Cloud
Not Supported
On-Premises
Not Supported
iPhone
Not Supported
iPad
Not Supported
Android
Not Supported
Chromebook
Not Supported
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Audience
Labs interested in a solution to manage, analyze, and visualize their research data
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Audience
Professional users interested in a solution offering scientific graphics and a GUI library for Python
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Support
Phone Support
Supported
24/7 Live Support
Not Supported
Online
Supported
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Support
Phone Support
Not Supported
24/7 Live Support
Not Supported
Online
Supported
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API
Offers API
Not Supported
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API
Offers API
Not Supported
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Screenshots and Videos |
Screenshots and Videos |
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Pricing
No information available.
Free Version
Not Supported
Free Trial
Not Supported
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Pricing
Free
Free Version
Supported
Free Trial
Not Supported
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Reviews/
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Reviews/
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Training
Documentation
Supported
Webinars
Not Supported
Live Online
Not Supported
In Person
Supported
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Training
Documentation
Supported
Webinars
Not Supported
Live Online
Not Supported
In Person
Not Supported
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Company Information10x Genomics
Founded: 2012
United States
www.10xgenomics.com/support/software/loupe-browser/latest
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Company InformationPyQtGraph
www.pyqtgraph.org
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Categories |
Categories |
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Integrations
Python
Not Supported
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