Audience
IT teams in need of a Component Library solution
About h5py
The h5py package is a Pythonic interface to the HDF5 binary data format. It lets you store huge amounts of numerical data, and easily manipulate that data from NumPy. For example, you can slice into multi-terabyte datasets stored on disk, as if they were real NumPy arrays. Thousands of datasets can be stored in a single file, categorized and tagged however you want. H5py uses straightforward NumPy and Python metaphors, like dictionary and NumPy array syntax. For example, you can iterate over datasets in a file, or check out the .shape or .dtype attributes of datasets. You don't need to know anything special about HDF5 to get started. In addition to the easy-to-use high level interface, h5py rests on a object-oriented Cython wrapping of the HDF5 C API. Almost anything you can do from C in HDF5, you can do from h5py.
Other Popular Alternatives & Related Software
broot
The ROOT data analysis framework is used much in High Energy Physics (HEP) and has its own output format (.root). ROOT can be easily interfaced with software written in C++. For software tools in Python there exists pyROOT. Unfortunately, pyROOT does not work well with python3.4. broot is a small library that converts data in python numpy ndarrays to ROOT files containing trees with a branch for each array. The goal of this library is to provide a generic way of writing python numpy datastructures to ROOT files. The library should be portable and supports both python2, python3, ROOT v5 and ROOT v6 (requiring no modifications on the ROOT part, just the default installation). Installation of the library should only require a user to compile to library once or install it as a python package.
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Bokeh
Bokeh makes it simple to create common plots, but also can handle custom or specialized use-cases. Plots, dashboards, and apps can be published in web pages or Jupyter notebooks. Python has an incredible ecosystem of powerful analytics tools: NumPy, Scipy, Pandas, Dask, Scikit-Learn, OpenCV, and more. With a wide array of widgets, plot tools, and UI events that can trigger real Python callbacks, the Bokeh server is the bridge that lets you connect these tools to rich, interactive visualizations in the browser. Microscopium is a project maintained by researchers at Monash University. It allows researchers to discover new gene or drug functions by exploring large image datasets with Bokeh’s interactive tools. Panel is a tool for polished data presentation that utilizes the Bokeh server. It is created and supported by Anaconda. Panel makes it simple to create custom interactive web apps and dashboards by connecting user-defined widgets to plots, images, tables, or text.
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PyQtGraph
PyQtGraph is a pure-python graphics and GUI library built on PyQt/PySide and NumPy. It is intended for use in mathematics/scientific/engineering applications. Despite being written entirely in python, the library is very fast due to its heavy leverage of NumPy for number crunching and Qt's GraphicsView framework for fast display. PyQtGraph is distributed under the MIT open-source license. Basic 2D plotting in interactive view boxes. Line and scatter plots. Data can be panned/scaled by mouse. Fast drawing for real-time data display and interaction. Displays most data types (int or float; any bit depth; RGB, RGBA, or luminance). Functions for slicing multidimensional images at arbitrary angles (great for MRI data). Rapid update for video display or real-time interaction. Image display with interactive lookup tables and level control. Mesh rendering with isosurface generation. Interactive viewports rotate/zoom with mouse. Basic 3D scenegraph for easier programming.
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Cython
Cython is an optimizing static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). It makes writing C extensions for Python as easy as Python itself. Cython gives you the combined power of Python and C to let you write Python code that calls back and forth from and to C or C++ code natively at any point. Easily tune readable Python code into plain C performance by adding static type declarations, also in Python syntax. Use combined source code level debugging to find bugs in your Python, Cython, and C code. Interact efficiently with large data sets, e.g. using multi-dimensional NumPy arrays. Quickly build your applications within the large, mature, and widely used CPython ecosystem. The Cython language is a superset of the Python language that additionally supports calling C functions and declaring C types on variables and class attributes.
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Pricing
Starting Price:
Free
Free Version:
Free Version available.
Company Information
HDF5
www.h5py.org
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Product Details
Platforms Supported
Windows
Mac
Linux
Training
Documentation
Support
Online
h5py Frequently Asked Questions
Q: What kinds of users and organization types does h5py work with?
h5py works with these users and organization types: Mid Size Business, Small Business, Enterprise, Freelance, Nonprofit, Government, and Startup.
Q: What languages does h5py support in their product?
h5py supports these languages: English.
Q: What kind of support options does h5py offer?
h5py offers support via online.
Q: What other applications or services does h5py integrate with?
h5py integrates with: BrainWave 6, NumPy, Python, Visual Studio, and Xcode.
Q: Does h5py have an API?
Yes, h5py has an API.
Q: What type of training does h5py provide?
h5py provides training in the form of documentation.
Q: How much does h5py cost?
Pricing for h5py starts at Free.
