Best Clinical Trial Management Software for Windows
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Compare the Top Clinical Trial Management Software for Windows as of June 2026
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What is Clinical Trial Management Software for Windows?
Clinical trial management software (CTMS) helps pharmaceutical companies, research organizations, hospitals, and clinical research teams plan, manage, and monitor clinical trials throughout the study lifecycle. These platforms streamline processes such as study planning, site management, patient recruitment, regulatory compliance, budgeting, and trial tracking to improve operational efficiency and data accuracy. The software often includes tools for electronic data capture, milestone tracking, document management, reporting, and communication between sponsors, CROs, and research sites. Many CTMS solutions integrate with electronic health records (EHR), laboratory systems, eConsent platforms, and regulatory systems to create a connected clinical research environment. By improving visibility, collaboration, and compliance across clinical operations, clinical trial management software helps organizations accelerate research timelines, reduce costs, and improve trial outcomes. Compare and read user reviews of the best Clinical Trial Management software for Windows currently available using the table below. This list is updated regularly.
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1
PracticeHarmony
Mahler Health
Practice Harmony is the premier practice management tool for running your healthcare practice. Our cloud-based practice management software solution streamlines your practice's operations and optimizes your workflow. Robust scheduling, advanced EHR, customized forms, patient dashboard, optimized voice-to-text, full RCM, TeleMedicine, TelePsychiatry, eRx, HIPAA Compliant CRM, and so much more. Streamlined operations require the perfect orchestration of efficient patient scheduling, proper documentation, and successful billing. Run your entire practice from scheduling to billing with just one log-in. Schedule a demo today to learn how you can bring Harmony to your Practice. -
2
Clinisys
Clinisys
Clinisys is a laboratory informatics and diagnostic technology company that provides laboratory information management systems (LIMS) and laboratory information systems (LIS) for healthcare, life sciences, public health, and research organizations. The company supports more than 7,000 laboratory customers worldwide and helps process billions of laboratory tests each year through its integrated laboratory platforms. Clinisys enables laboratories to improve diagnostic workflows, disease surveillance, testing operations, and scientific research through connected data and modern laboratory technologies. Its solutions are designed to help laboratories improve efficiency, productivity, scalability, and data accessibility across multiple industries and specialist disciplines. Clinisys serves healthcare, biotech, pharma, environmental, food and beverage, crop science, water, and public health sectors with industry-specific laboratory solutions. -
3
Aarogya
Dataman Computer Systems
Aarogya, Hospital Management Information System, offers features such as OPD Management, IPD Management. OT Management, TPA Management, Pathology Lab Management, Inventory Management, Finance & Accounting Management, Blood Bank Management and more. It offers business hours, and 24/7 live support. Reliable software solution for mid-size to large hospitals, Investigations labs and polyclinics.Starting Price: $5000 -
4
BizNet
Sarjen Systems
Sarjen delivers an AI-enabled Clinical Trial Management System and Bioanalytical LIMS that drives digital transformation across early-phase and late-phase clinical trials. This integrated eClinical platform supports end-to-end trial management, site management, subject tracking, regulatory compliance, and real-time laboratory sample management within a unified ecosystem. Built for pharma, biotech, and CRO organisations, the software enhances operational efficiency through workflow automation, centralised data management, and advanced analytics. Its AI features include predictive enrollment forecasting, risk-based monitoring insights, anomaly detection in lab data, automated query resolution, and intelligent dashboards that improve decision-making. By leveraging machine learning and smart automation, the platform accelerates study timelines, improves data quality, ensures compliance readiness, and transforms clinical research operations!Starting Price: $79 -
5
Phoenix CTMS
Phoenix CTMS
Phoenix CTMS is an integrated, web-based platform combining Patient Recruitment System (PRS), Clinical Trial Management System (CTMS), and Clinical Data Management System (CDMS) functionalities into one modular, free-to-use application. Designed to meet the operational and regulatory needs of clinical research, it supports academic institutions, CROs, and hospitals conducting trials of any phase. The system offers private, encrypted subject registries to safeguard personally identifiable information and complies with EU-GDPR requirements. Phoenix CTMS includes advanced electronic data capture (EDC) features with unlimited JavaScript form scripting and support for large electronic case report forms (eCRFs). It enables managing multiple trials simultaneously with tools for site staff and resource organization. Developed collaboratively with the Medical University of Graz, Phoenix CTMS is a secure, open source alternative to traditional EDC packages.Starting Price: $1 one-time payment -
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Dacima Clinical Suite
Dacima Software Inc.
Dacima Clinical Suite is the most advanced web-based solution that combines electronic data capture (EDC), clinical data management software (CDMS), and clinical trial management software in a single platform. Built for clinical trials, epidemiological research, web randomization (IWRS), ePRO, web surveys, and patient registries, Dacima Clinical Suite helps efficiently streamline the clinical data collection process. Dacima Clinical Suite consists of three core modules: Manager (Administrator) Module, Designer Module, and Data Entry Module. -
7
CTMS Master
Anju Software
Premier clinical trial management system designed specifically to help overcome technical challenges associated with managing clinical trials. CTMS Master improves user accessibility and communication, reduces manual operations, and eliminates redundant data and tasks, allowing a more efficient trial conduct. An integrated Site Visit Report tool with automated workflow eliminates duplicate data entry and facilitates the creation of out-of-the-box Site Visit Reports (SVR). Maintain standard templates for project and site documents, events, milestones, site visit reports and budgets that are tailored as needed for each study. CTMS Master provides 100+ metrics/statistics for clinical study projects, countries and sites as well as 80+ standard reports plus ad hoc reporting capabilities. With CTMS Master, you can define site-specific budgets from a default budget template, track accrued payments and future obligations, define automatic or manual approval of each payment type, and more. -
8
Zingtree
Zingtree
Zingtree allows you to build no-code, interactive decision trees that help you create agent scripts, guide customers, and manage internal processes. By turning your workflows into a choose-your-own-adventure-type experience, you help your users reach the next best action and make the complex simple. And because its a no-code solution, business users can create, deploy, and manage their decision trees with little-to-no IT work.Starting Price: $25.00/month -
9
Protocol Manager (CTMS)
Atlant Systems
Protocol Manager helps clinical operations manage global trials of drugs, devices, biologics, and vaccines in all phases of development. When the appropriate Standard Operating Procedures (SOPs) are implemented in your company, Protocol Manager can help you be compliant with the FDA’s 21 CFR part 11 regulations. Protocol Manager supports Web Services technology to provide seamless, automatic integration with many popular EDC and IVRS products. For systems not supporting Web Services, integration is supported via an export/import mechanism. A robust tracking tool and database designed to manage myriad trial information and metrics. -
10
ClinVigilant
ClinVigilant
Streamline your clinical studies with Clinvigilant, your global cost-effective eClinical tools provider for CROs, Pharma, Biotech, Nutraceuticals and Academic organizations in clinical and post-marketing stages. Most of our clients choose and stay with us for thanks to our: ♦ Fast EDC set-up (less than 4 weeks). ♦ Cost-effectiveness. ♦ 3rd party integrations (including legacy systems). Our cloud-based suite (Microsoft Azure) is HIPAA, ICH-GCP, GDPR & 21 CFR part 11 compliant and we have been audited by the FDA, EMA and MHRA. The Clinvigilant eClinical suite includes: EDC, CTMS, eCRF, eTMF, eSource, IWRS, ePRO, eConsent and eCOA. Just pick the tools that you need and we will integrate them within your existing software ecosystem. How simple and user-friendly is it? Ask for a demo to find out! Clinvigilant💊, your one-stop 🌐solutions provider for ☁️clinical trials. Enquiries > bd (at) clinvigilant.com -
11
g.BSanalyze
Guger Technologies
g.BSanalyze is an interactive environment for multimodal biosignal data processing and analysis in the fields of clinical research and life sciences. g.BSanalyze has been on the market for more than twenty years, and is used in more than 70 countries. It is the most comprehensive package available to analyze non-invasive and invasive brain-, heart- and muscle functions and dysfunctions. The package won several international awards. The new version includes many new functions such as topographic plots, CCA, new filters, an importer for cortiQ files, updates for Result2D, Cortio-Cortical Evoked Potentials, an ECoG toolbox, a TMS toolbox, and more! The package comes with many sample biosignal data sets, including P300, SSVEP, motor imagery, CSP BCIs, Tilt-Table, EPs, multi-unit activity, CFM, CCEP, and ERD/ERS. Interactive and intuitive graphical user interface for EEG, ECoG, EOG, EMG, ECG, spikes, and physical data analyses and documentation under MATLAB.Starting Price: $0.02/one-time -
12
ClinSoft
Innovate Research
Innovate’s End-To-End Clinical Data Management Services. Our clinical data management processes, expertise and technology are developed to make each step of your clinical trial data management process more accurate and efficient for Phase I-IV in wide range of therapeutic areas. Our CDM Team Is Well-Versed With Current Good Clinical Data Management Practices (cGCDMP) International conference on harmonization Good Clinical Practices (ICH-GCP) 21 CFR Part 11 Compliance Health Insurance Portability and Accountability Act (HIPAA) Requirements Applicable Regulatory Guidelines SAS datasets SAS XPORT transport files EDC Helpdesk Support 24/7 On-Site and Off-Site Clinical Data Management Services Electronic Data integration and transfer Quality Control Activities Medical Dictionary for Regulatory Activities (MedDRA) Serious Adverse Event (SAE) Reconciliation Clinical Database Transfers Clinical Database Lock paper Case Report Form (pCRF) and electronic Case Report Form. -
13
Cronos
Webosphere
In-system protocol & its a training program. Equipped with fingerprint attendance. Cronos provides highly customizable if/workflows capable for conducting derma/ patch/ other BA-BE/ early phase studies. Capture, cleanse and efficiently manage your study data from paper-based or EDC-based trials. Extract data in desired datasets following standards like CDISC (SDTM). EDC tool with real-time activities. It’s Bedside Data Collection capabilities help in paperless & faster assessments. It comes with a sample inventory & tracking facility as well. Compliance-ready data repository.The facility of data e-printing from almost all BA instruments/software and online review of data in defined workflow with e-stamping and e-signature.Project-wise view, export & archival of data. Generate high-quality statistical reports (tables, listings & formats) in fixed/desired formats with ease. -
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nQuery
Statistical Solutions
From sample size and power analysis to adaptive trial design, discover the nQuery difference today. The complete trial design platform to make clinical trials faster, less costly & more successful. See why nQuery is the #1 choice for researchers and Biostatisticians worldwide who need to tackle increasing trial complexity, spiraling costs and changing regulations. Calculate sample size for FDA/EMA submission. Fast spreadsheet-style interface with no coding required. Solutions for Frequentist and Fixed-term trials. Easy to use reporting for all trial stakeholders. Provide realistic estimates of expected timings and costs. Align your sample size with scientific & budgetary requirements. Fine-tune calculations with the specify multiple factors tool. 1000+ sample size and power calculation procedures. Rapidly calculate sample size for a multitude of scenarios -
15
CANTAB
Cambridge Cognition
Originally developed at the University of Cambridge, the Cambridge Neuropsychological Test Automated Battery (CANTAB) includes highly sensitive, precise and objective measures of cognitive function, correlated to neural networks. CANTAB tests have demonstrated sensitivity to detecting changes in neuropsychological performance and include tests of working memory, learning and executive function; visual, verbal and episodic memory; attention, information processing and reaction time; social and emotion recognition, decision making and response control. Cognitive assessments are invaluable tools for understanding the role of specific brain functions across a range of disorders and syndromes; giving insight into underlying causes, identifying ways to detect the earliest symptoms and evaluating the effects of interventions designed to improve brain health. -
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ActiTrack
Panlab
ActiTrack controls data coming from up to 32 IR frames. It discriminates and analyses frequency and number of IR beam breaks to convert it in a track file that can be analysed later for generating reports. Thus ActiTrack provides much more integrated and precise data in terms of animal activity, position, displacements and rearings than those provided by the SeDaCom software. The IR actimeter enclosure can be divided into zones of interest (up to 32) using the specific tools provided by Actitrack. Animal trajectories are acquired from real time beam breaks and stored enabling the user to analyze and re-analyse experiments with different zone configurations, associations (user-defined combination of zones) and parameters. Track can be replayed in real-time or by using an "accelerated" (user-defined speed) or "instantaneous" modes. The report cover either the full track or partial sections of time. -
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STARLIMS
STARLIMS
We simplify the complexity of your entire product lifecycle management process. Easy-to-use and adaptable to your organization’s needs, the STARLIMS brand of lab informatics solutions support the rapidly changing data management needs across your organization. Our laboratory information management solutions (LIMS software) can integrate with your current systems, while also identifying opportunities to improve processes so you can bring high quality and safe products to market faster. -
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Novatek Clinical Assay Management Software
Novatek International
Novatek’s Clinical Assay Management software is a unique information management application that provides a consistent approach to the collection, management and integrity of clinical research study data. Novatek’s Clinical Assay Management software tracks and manages all sample data throughout its whole analytical process and ensures a single verifiable version for all clinical and analytical data sets. Novatek’s Clinical Assay Management software `helps organizations manage their studies based on a particular product that is being developed. In addition, this application will give clinical studies the structure that is required to ensure all related steps are executed in a timely manner. -
19
ClinicSoftware.com
Clinic Software
Looking for a CRM Software alternative? Two steps ahead. Make running your business Smarter, Better, Faster. Instantly. ClinicSoftware.com is a full suite of tools in cloud based created to help companies and appointment-based businesses of any industry and size such as Clinics, Spas and Salons to Grow Sales, Save Time & Get Organized. Awarded The Most Innovative Software in the industry, 98% of customers recommend ClinicSoftware.com -
20
Medilake
CLUPEA
Introducing Medilake: Your Premier Solution for Comprehensive Clinical and Non-Clinical Trial Data Management We are delighted to introduce Medilake, an innovative and versatile platform that excels in the seamless management of both clinical trial and non-clinical trial data. In an era where data is the lifeblood of healthcare and research, Medilake emerges as the ultimate choice for simplifying, optimizing, and enhancing data management processes across the spectrum of clinical and non-clinical trials. * Why Choose Medilake for Clinical and Non-Clinical Trial Data Management? - Unified Data Hub - Streamlined Collaboration - Data Integrity and Security - Advanced Analytics - And Scalability and CustomizationStarting Price: $100/month -
21
Folio3 Clinical Trial Management
Folio3 Digital Health
Folio3 Digital Health's Clinical Trial Management Software (CTMS) is a comprehensive, web-based platform designed to streamline the entire clinical trial lifecycle for pharmaceutical companies, CROs, and research organizations. It centralizes trial operations, from planning and site management to data collection and reporting, ensuring compliance with global regulations like FDA 21 CFR Part 11, GxP, and HIPAA. The software emphasizes user-friendly interfaces, real-time dashboards, and scalable modules to handle trials of any size efficiently. Core Modules The platform features dedicated modules for study setup, where users define protocols, timelines, and budgets with customizable templates. Site management tools track investigator qualifications, contracts, and payments, while patient recruitment capabilities include screening, enrollment tracking, and visit scheduling with automated reminders.Starting Price: $300 -
22
MEDAS HIMS
MEDAS
MEDAS HIMS is a complete web-based ERP software solution for small to large-level hospitals, providing enhanced patient care with maximum operational efficiency, real-time data sharing and revenue. This browser-based application system can be operated with a wide range of devices for easy and accurate data capturing. The system’s well-defined workflow helps organizations manage OP and IP functions smoothly and effectively with high patient satisfaction. The integrated and advanced EMR module captures maximum data and enables simple, safe and secure access to information. The multi-tenant architecture of the system helps manage multiple sites/locations individually. -
23
PRA Prism
Nextrials
Data comes at you from all directions – EDC, EHR, smartphones, mobile devices, central laboratories. Prism assimilates data from these disparate sources and transmutes them into information and ultimately knowledge. Prism EDC combines ease-of-use with innovative features to provide a fresh solution for the collection and management of clinical trial data. Prism offers more that than form-based data collection, it aggregates and manages data from a myriad of data sources. Prism eSource is an innovative software solution that allows research teams to extract clinical trial information directly from a site’s electronic health record (EHR). This creates efficiencies and cost savings beyond the current paradigm where sites must enter the same data in multiple systems and accelerates the delivery of novel therapies to patients. -
24
MAISi
Agile Health Computing
Until now, the options available for managing clinical trials at an investigator site were either keeping multiple shared spreadsheets or buying expensive software unsuited to Australian conditions. MAISi is the game-changer. Beginning as a repository for clinical trials data at a major hospital in 2001, MAISi has evolved into a sophisticated workflow application to assist in most aspects of a research unit’s operations. MAISi acts as a central repository of data to store information about studies and the business units that run them. The datasets are arranged to support management decision-making. Staff in each business unit have access to the data (Studies, Patients, Investigators, Study Team Members) associated with their own business unit, whereas staff granted global access (normally Financial Officers and System Administrators) have access to all data. -
25
Clindex
Fortress Medical Systems
A Clinical Data Management System (CDMS), Clinical Trial Management System (CTMS) and Electronic Data Capture System (EDC) all in one powerful, integrated solution. All your study information can be at your fingertips with our innovative, flexible and compliant Clinical Trial Software System. Our servers or yours. Clindex® can be installed on your servers or it is available on the Fortress Medical Cloud (SaaS – Software as a Service). Cloud access is available world-wide and your data is securely stored at a SOC 3 certified data center. You can build, we can build. Clindex® provides all the tools you need to develop your own study database. Our quick start manuals and help documentation walk you through the process, step by step. Or our Clindex services team can develop a study for you. -
26
Trialpack Designer II
Fleximation
Trialpack Designer is an easy-to-use and powerful tool to design blister packs and cards for clinical trials. It is particularly well suited to design packages for complex blinded trials such as dosage titrations, double-dummy and cross-over trials where a pack contains a range of different products. It provides configuration data for the Trialpack PC Controller, the Trialpack Controlled Dosing Systems and the Trialpack Robotic Packaging Systems. Direct and easy on screen design of blister shapes, print images and filling patterns. Highly granular user access rights. Workflow features with electronic signatures. Detailed 21 CFR Part 11 compliant audit trail. Reports with detailed packaging instructions and material requirements. -
27
DFdiscover
DFnet
DFnet is a healthcare technology company that provides eClinical solutions, including electronic data capture, eSource, and data management services. We bring more flexibility, better data quality, and greater efficiency to clinical trials everywhere in the world. Collect data from any source – paper crfs, EDC and other electronic sources, online/offline tablet and ePRO entries. Install within your controlled premises or allow us to host in our secure cloud environment. Accelerate SDV and RBM processes with advanced optical recognition that shaves time off manual data entry. Built for maximum flexibility of multi-center studies. Web-based data capture from any source is instantly available in a centralized real-time platform. -
28
Catchtrial
Meditrial Europe
Catchtrial is the online electronic solution to manage CRFs and images with efficacy and speed. Simple, secure, affordable, Catchtrial has been chosen by leading manufacturers and small companies alike to manage their international trials. By replacing the paper-based process, Catchtrial ensures cost savings. No monitor visits to sites will be needed to collect paper CRF. You can also capture and upload images, so there will be no need to ship CD roms. Sponsors have full control of the study progress, simply by accessing the study from their offices. Compared to other eCRF offerings, Catchtrial offers special functionalities and flexible personalizations for unprecedented ease of trial management. -
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Ofni Clinical
Ofni Systems
Ofni Clinical is a clinical data management tool that rapidly creates and implements secure, regulatory compliant clinical trial databases. Ofni Clinical includes comprehensive search and report features, has strong data validation and edit check options, contains flexible customization tools, and can be implemented quickly and economically. The databases can be used to capture data from existing paper Case Report Forms or as paperless electronic data capture systems. Many Ofni Clinical projects require less than a month to go from project initiation to validated implementation. Contact us today and find out how to use Ofni Clinical for your clinical trials. Matches your existing Case Report Forms (CRFs), reducing training and implementation costs while adding electronic data capture and review capabilities. Includes extensive edit check and data validation features to identify questionable data entry and support data analysis. -
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Octalsoft CTMS
Octalsoft
Octalsoft provides COTS packaged solution services, which includes consulting, implementation and ongoing support and maintenance. Octalsoft has been providing custom software solutions that power businesses, and throughout the years, our focus had remained the same delivering exceptional customer. Embrace smart technology and outperform your competition. Organizations embracing cloud computing can enable rapid growth, scale faster. Octalsoft is a global IT consulting and outsourcing firm offering extensive expertise in business software selection, IT system integration, application development, training, and ongoing IT support of software solution based on web and database technologies. We offer a range of software solutions and IT Services to address your complex business challenges. Everyday we help businesses and organizations significantly improve processes and maximize resources by providing strategic Information Technology solutions.
