VividSTORM is a free and open-source standalone software with graphical user interface, for the correlated visualization and analysis of superresolution single molecule localization microscopy (SMLM) molecule lists and conventional pixel intensity-based images.
The localization points (LPs) within this ROI can be analyzed using the selected built-in functions.

NOTE: If you encounter issues not addressed by the user guide, please contact by message on this site or via e-mail for additional support: vividstorm[at]koki.mta.hu

If you find our software useful in your project, please cite:
Correlated confocal and super-resolution imaging by VividSTORM
Nature Protocols 11, 163–183 (2016)
doi:10.1038/nprot.2016.002

Features

  • Filtering of SMLM coordinates
  • Manual and automatic (MACWE) ROI selection
  • Measurement of molecular abundance
  • DBSCAN clustering on SMLM data
  • Internalization index calculation
  • Intermolecualr (Euclidean and surface) distances
  • Surface density measurements

Project Samples

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Linux, Windows

Intended Audience

Science/Research, Advanced End Users

User Interface

Qt

Programming Language

Python

Related Categories

Python Data Visualization Software

Registered

2015-10-10