This project includes perl scripts to perform transcriptome reconstruction in bacteria (operons and UTRs). The software was applied to the transcriptome reconstruction of the species Methanococcoides burtonii, if you use it please refer to the following paper (Taha et al., Single TRAM domain RNA-binding proteins in Archaea: functional insights from Ctr3 from the Antarctic methanogen Methanococcoides burtonii - Submitted).
The approach used is based on previous results:
- Campanaro S, et al. The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain. BMC Genomics. 2012; 13:567.
It uses as input the coverage files generated by the software ORA (https://sourceforge.net/projects/transcriptomeassemblyora/files/) (Sardu A, Treu L, Campanaro S. Transcriptome structure variability in Saccharomyces cerevisiae strains determined with a newly developed assembly software. BMC Genomics. 2014; 15:1045.)

Project Activity

See All Activity >

Follow Transcriptome reconstruction bacteria

Transcriptome reconstruction bacteria Web Site

Other Useful Business Software
Try Google Cloud Risk-Free With $300 in Credit Icon
Try Google Cloud Risk-Free With $300 in Credit

No hidden charges. No surprise bills. Cancel anytime.

Use your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of Transcriptome reconstruction bacteria!

Additional Project Details

Registered

2015-10-28
Report inappropriate content