TargetedSim

Brought to you by: kamarasinghe

Last Update: 2012-07-13

Get an email when there's a new version of TargetedSim

TargetedSim is a tool for creating Illumina paired-end reads from targeted regions in a chromosome. This can also simulate copy number variations at random locations in the targeted regions.

Project Activity

See All Activity >

Follow TargetedSim

TargetedSim Web Site

Other Useful Business Software

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Learn More

Rate This Project

User Reviews

Be the first to post a review of TargetedSim!

Additional Project Details

Registered

2011-10-12

Report inappropriate content

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Learn More

Recommended Projects

cnvCapSeq
detecting & genotyping CNV in long-range targeted resequencing.
IMAGE
IMAGE stands for Iterative Mapping and Assembly for Gap Elimination. It is a software designed to close gaps in any draft assembly using Illumina paired end reads.
CONTRA
Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
GemSIM
GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
skewer
A fast and sensitive adapter trimmer for illumina paired-end sequences