SNPTools is a suite of tools that enables integrative SNP analysis in next generation sequencing data with large cohorts. It not only calls SNP in a population with high sensitivity and accuracy, but also employs a novel imputation engine to achieve highly accurate genotype calling and phasing in an efficient way.
Thanks for Snptools, it's excellent!
Hey. My output of pileup are C2.sorted.bam.edb and C6.sorted.bam.edb The version of reference is Saccharomyces cerevisiae EF4.66 The list file is /home/bo/program/snptools/C2.sorted.bam.ebd /home/bo/program/snptools/C6.sorted.bam.ebd The command line about varisite is ./varisite list.txt chr /media/6729f29b-428d-4980-9c8a-eb9613fc2cfb/yeast-linux-reference.fa The fault information is binding 2 groups 1 loading /media/6729f29b-428d-4980-9c8a-eb9613fc2cfb/yeast-linux-reference.fa fail to read /home/bo/program/snptools/C2.sorted.bam.ebd fail to read /home/bo/program/snptools/C6.sorted.bam.ebd Segmentation fault