A perl molecular toolkit designed to assist in general molecular modelling activities. Silico provides file format conversion, molecular manipulation and analysis and a simple way to write wrapper scripts around other preexisting software packages.

Features

  • Read and write multiple modelling formats: pdb, mol2, sdf, mae, maegz, etc.
  • Build bilayers, vesicles and micelles
  • Dendrimer construction
  • Wrapper routines for Schrodinger Macromodel and Sybyl
  • Manipulate Gromacs .itp files

Project Samples

Dendrimer built with starmaker Vesicle built with vesicle_builder Cylinder of molecules built with random_box

Project Activity

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Categories

Chemistry

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Perl

Related Categories

Perl Chemistry Software

Registered

2008-03-27
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