scopeplusplus

SCOPE++: Sequence Classification Of homoPolymer Emissions

Brought to you by: karroje, liangc_mu, mortonjt

Add a Review

Downloads: 0 This Week

Last Update: 2014-07-31

Browse Code

Get an email when there's a new version of scopeplusplus

SCOPE++ is a C++-based program for accurately identifying homopolymer in cDNA sequences using Hidden Markov Models. This can be extended to trimming poly(A)/poly(T) tails, or identifying A,C,G,T,or N homopolymer sequences.

Project Activity

See All Activity >

Follow scopeplusplus

scopeplusplus Web Site

Other Useful Business Software

Go From AI Idea to AI App Fast

One platform to build, fine-tune, and deploy ML models. No MLOps team required.

Access Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.

Try Free

Rate This Project

User Reviews

Be the first to post a review of scopeplusplus!

Additional Project Details

Registered

2014-06-07

Report inappropriate content

Go From AI Idea to AI App Fast

One platform to build, fine-tune, and deploy ML models. No MLOps team required.

Access Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.

Try Free

Recommended Projects

Poly/ML
The Poly/ML implementation of Standard ML
Sequence Cleaner
a script for automated trimming and validation of ESTs or other DNA sequences by screening for various contaminants, low quality and low-complexity sequences.
Blockbench
Blockbench - A low poly 3D model editor
TagDust
Raw sequences produced by next generation sequencing (NGS) machines may contain adapter, linker, barcode and fingerprint sequences. TagDust2 is a program to extract and correctly label the sequences to be mapped in downstream pipelines. TagDust allows users to specify the expected architecture of a read and converts it into a hidden Markov model. The latter can assign sequences to a particular barcode (or index) even in the presence of sequencing errors. Sequences not matching the architecture (primer dimers, contaminants etc.) are automatically discarded
skewer
A fast and sensitive adapter trimmer for illumina paired-end sequences