Systems Biology Markup Language (SBML) - Browse /libsbml/MATLAB Interface at SourceForge.net

A file format for exchanging computational models in systems biology

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Name	Modified	Size	InfoDownloads / Week
Parent folder
Older versions	2018-12-07		0
libSBML-5.18.0-matlab-oldmacosx-binaries.tar.gz	2019-04-17	3.7 MB	0
libSBML-5.18.0-matlab-binaries.tar.gz	2019-04-15	25.7 MB	1
libSBML-5.18.0-matlab-binaries.zip	2019-04-15	25.5 MB	0
README.md	2018-05-14	2.9 kB	0
Totals: 5 Items		54.8 MB	1

MATLAB interface for libSBML

LibSBML is a free, open-source programming library to help you read, write, manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with example programs), but rather a library you can embed in your own applications.

This archive contains standalone binaries for the libSBML MATLAB interface. The interface files are ready to run; they require no compilation or additional steps beyond informing MATLAB about the path to the folder where you unpacked the archive. Instructions for doing this are given below. Binaries are provided for all supported operating systems in the same archive.

Please use the most recent files:

libSBML-5.17.0-matlab-binaries.zip -- zip archive
libSBML-5.17.0-matlab-binaries.tar.gz -- gzip'ed tar archive

The general binaries may not work with older versions of Mac OS. The archive below will work but has not been tested with more recent versions of MATLAB.

libSBML-5.17.0-older-macos-binaries.tar.gz -- gzip'ed tar archive for use with older versions of Mac OS X.

If you have a combination of MATLAB and OS for which neither of the above work please let us know.

Installation instructions

Extract the archive somewhere on your local computer.
Start your copy of MATLAB and add the folder to your MATLAB path using addPath.
Verify that everything works. You can do this easily by changing into that folder within your running MATLAB environment, then issuing the command TranslateSBML('test.xml') in MATLAB. If everything went as planned, the output of that command will be a MATLAB structure representing the toy test model.
Save the changes to your MATLAB path for future use. To do this, you can use the savepath command in MATLAB.

Alternative Installation

Extract the archive somewhere on your local computer.
Start your copy of MATLAB, navigate to the extracted folder and run 'installSBML'. This will add the path and verify that everything works (as above).