A lightweight OpenGL based interactive SAM/BAM viewer. Quickly and easily generate aggregate statistics from SAM/BAM files like coverage, polarity, and minor allele frequencies, then scroll and explore freely with a simple mouse based interface. Multiple windows can be synchronized for careful comparison across multiple experiments.

Project Samples

A close up on ChIP-SEQ data from a chicken centromere showing forward, reverse, and polarity data simultaneously. Illustrating feature calling on a heterozygous base in a deep coverage (SureSelect) example. Chicken centrome ChIP-SEQ coverage Minor and major alleles frequencies from RNA-Seq on Natto, also showing GTF gene annotation overlay. A close up on a small clump of reads showing the read detail display

Project Activity

See All Activity >

Categories

Bio-Informatics, Data Visualization

License

Affero GNU Public License

Follow samscope

samscope Web Site

Other Useful Business Software
No-Nonsense Code-to-Cloud Security for Devs | Aikido Icon
No-Nonsense Code-to-Cloud Security for Devs | Aikido

Connect your GitHub, GitLab, Bitbucket, or Azure DevOps account to start scanning your repos for free.

Aikido provides a unified security platform for developers, combining 12 powerful scans like SAST, DAST, and CSPM. AI-driven AutoFix and AutoTriage streamline vulnerability management, while runtime protection blocks attacks.
Start for Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of samscope!

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

OpenGL

Programming Language

C++

Related Categories

C++ Bio-Informatics Software, C++ Data Visualization Software

Registered

2011-09-30
Report inappropriate content