We have implemented QuickRNASeq, an open-source based pipeline for large scale RNA-seq data analysis. QuickRNASeq takes advantage of parallel computing resources, a careful selection of previously published algorithms for RNA-seq read mapping, counting and quality control, and a three-stage strategy to build a fully automated workflow. We also implemented built-in functionalities to detect sample swapping or mislabeling in large-scale RNA-seq studies.

Our pipeline significantly lifts large-scale RNA-seq data analysis to the next level of automation and visualization. Please take a look at our test run project report and get a taste of its rich interactive visualization features. http://baohongz.github.io/QuickRNASeq

QuickRNASeq user guide can be downloaded or is accessible online as well
http://baohongz.github.io/QuickRNASeq/guide.html

For more on QuickRNASeq, please see our paper http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-2356-9

Enjoy QuickRNASeq

Project Samples

Project Activity

See All Activity >

Categories

Data Analytics

Follow QuickRNASeq

QuickRNASeq Web Site

Other Useful Business Software
Enterprise-grade ITSM, for every business Icon
Enterprise-grade ITSM, for every business

Give your IT, operations, and business teams the ability to deliver exceptional services—without the complexity.

Freshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
Try it Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of QuickRNASeq!

Additional Project Details

Registered

2015-10-19