We have implemented QuickRNASeq, an open-source based pipeline for large scale RNA-seq data analysis. QuickRNASeq takes advantage of parallel computing resources, a careful selection of previously published algorithms for RNA-seq read mapping, counting and quality control, and a three-stage strategy to build a fully automated workflow. We also implemented built-in functionalities to detect sample swapping or mislabeling in large-scale RNA-seq studies.

Our pipeline significantly lifts large-scale RNA-seq data analysis to the next level of automation and visualization. Please take a look at our test run project report and get a taste of its rich interactive visualization features. http://baohongz.github.io/QuickRNASeq

QuickRNASeq user guide can be downloaded or is accessible online as well
http://baohongz.github.io/QuickRNASeq/guide.html

For more on QuickRNASeq, please see our paper http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-2356-9

Enjoy QuickRNASeq

Project Samples

Project Activity

See All Activity >

Categories

Data Analytics

Follow QuickRNASeq

QuickRNASeq Web Site

Other Useful Business Software
Auth for GenAI | Auth0 Icon
Auth for GenAI | Auth0

Enable AI agents to securely access tools, workflows, and data with fine-grained control and just a few lines of code.

Easily implement secure login experiences for AI Agents - from interactive chatbots to background workers with Auth0. Auth for GenAI is now available in Developer Preview
Try free now
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of QuickRNASeq!

Additional Project Details

Registered

2015-10-19