High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems.

Features

  • ppalgn - aligning sequencing reads to long reference sequences
  • ppbwt - building a FM-index from a set of DNA sequences

Project Samples

Project Activity

See All Activity >

Follow PPSeq: Parallel NGS Analysis

PPSeq: Parallel NGS Analysis Web Site

Other Useful Business Software
Keep company data safe with Chrome Enterprise Icon
Keep company data safe with Chrome Enterprise

Protect your business with AI policies and data loss prevention in the browser

Make AI work your way with Chrome Enterprise. Block unapproved sites and set custom data controls that align with your company's policies.
Download Chrome
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of PPSeq: Parallel NGS Analysis!

Additional Project Details

Operating Systems

Linux

Intended Audience

Education, Engineering, Healthcare Industry, Information Technology, Non-Profit Organizations, Science/Research

User Interface

Command-line

Programming Language

C++

Related Categories

C++ Algorithms, C++ Genetic Algorithms, C++ Bio-Informatics Software

Registered

2013-09-30