popbam

POPBAM is a tool to perform evolutionary or population-based analyses of next-generation sequencing data. POPBAM takes a BAM file as its input and can compute many widely used evolutionary genetics measures in sliding windows across a genome.

Project Samples

The main POPBAM menu invoked by calling the program with no arguments

The haplo function submenu, invoked by calling the program followed by the name of the function, with no further arguments

POPBAM output of sliding windows of minimum Dxy

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License

BSD License, MIT License

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

C++

Related Categories

C++ Bio-Informatics Software

Registered

2011-08-12

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