PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to accurately place proteins into orthologous clusters.

Project Samples

PanOCT Memory Usage Plot

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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PanOCT Web Site

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Additional Project Details

Operating Systems

Linux, Mac

Intended Audience

Science/Research, Advanced End Users, Developers, End Users/Desktop

User Interface

Command-line

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2011-10-26
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