MODIFIED: VIGOR3.pm - modified blast+ calls to have new minimum wordsize of 2, based on blast+ constraints; numerous changes to regexes for parsing blast+ output
MODIFIED: README.txt - removed references to removed modules, added reference to Config::IniFiles
MODIFIED: numerous changes to allow transition from blast to blast+
MODIFIED: create_meta_groupings.pl - touched up pod in help documentation for clarity/formatting
MODIFIED: parse_genbank_files.pl - changed name...
Converted fastacmd calls to blast+ blastdbcmd
Migration of formatdb calls to blast+ makeblast...