Whole-genome scale multiple genome local alignment search program. Supports unlimited length gapped-seed patterns, parallelization through distributed hashing, and unique a TF-IDF based repeat filtering method.

Features

  • MPI
  • unlimited patterns
  • spaced seeds
  • multiple alignment
  • distributed computing

Project Samples

9 mammalian genome comparison

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Advanced End Users, Developers, End Users/Desktop, Science/Research

User Interface

Command-line

Programming Language

C++, Perl

Database Environment

SQL-based

Related Categories

Perl Bio-Informatics Software, C++ Bio-Informatics Software

Registered

2007-02-20
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