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Kinannote

Protein Kinase Identification and Classification

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Description

Kinannote identifies and classifies protein kinases in a user-provided fasta file using an HMM derived from serine/threonine protein kinases, a position specific scoring matrix derived from the HMM, and comparison with a local version of the curated kinase database from kinase.com. If the user inputs a complete proteome, additional modules evaluate the completeness of the kinome and place it in context with reference kinomes. Kinannote runs on a unix command line and depends on local hmmer 2 and Blast 2.24 installations.

Citing Kinannote:

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily
Jonathan M. Goldberg; Allison Griggs; Janet L. Smith; Brian Haas; Jennifer Wortman; Qiandong Zeng
Bioinformatics 2013; doi: 10.1093/bioinformatics/btt419

http: http://bioinformatics.oxfordjournals.org/content/29/19/2387.full

pdf: http://bioinformatics.oxfordjournals.org/content/29/19/2387.full.pdf+html

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Categories

Bio-Informatics

License

BSD License

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Additional Project Details

Intended Audience

Science/Research

Programming Language

Perl

Registered

2012-09-17

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